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What Happens Underground Influences Global Nutrient Cycles
… Tfaily of the University of Arizona. Her team aims to use data from an interdisciplinary field campaign taking place … drought and multi-isotope labeling experiment, and the data will allow them to better understand the impacts of …
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DOE JGI Interns Share Their Summer Experiences
… Many of them spent the summer crunching genomic data at a computer; a few had the opportunity to spend time … Ali, who worked with T.B.K. Reddy on the Genomes OnLine Database; Sarah Fruchart , who worked with Matt Blow; Sean …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… accepted through JGI’s calls. Nearly 200 Terabases of data are expected to be generated for the accepted … or by allowing the generation of preliminary data for a larger study.” …
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Four Researchers Join JGI User Executive Committee
… advanced genomic capabilities, large-scale AI-ready data and expertise to the global research community to study … is also interested in contributing to discussions on JGI data reuse and attribution.  Bonito is an associate …
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Introducing New Members of the JGI User Executive Committee
… in access, analysis and sharing of JGI-generated data. She is also interested in reaching and engaging with …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new technology developments – has … said. Given the vast unknowns contained in metagenomic data sets, Holmes and his group set out to use protein … many structures as you can, and then you use that trained dataset to interrogate the new data, to try and find those …
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The Power of One, Amplified
… of microbial genomes directly from environmental sequence data, by piecing each genome together from large mixtures of … was identified from microbial and metagenome sequence data sets generated from a handful of hot springs, including … A single sample was then used to produce a paired amplicon dataset (a.k.a. 16S rRNA gene sequencing), a shotgun …
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Natural Prodcast Episode 5: Brad Moore
… before you see toxin. And we have some preliminary data with other samples that we do see days to a week of a …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… early stages, so I can begin biological analysis of the data sooner than I anticipated.” In her message, Dumont … the initiation of the Venomous Host-Microbe Consortium. Data produced during Ul-Hasan’s JGI internship led to her …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… be specific to species or groups of species.  The genome data also revealed that green millet was introduced into the … and Adam Healey, two of the co-first authors, led the data analyses and assembled the green millet “pan-genome” (a … Datasets …
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Natural Prodcast Episode 14: Nigel Mouncey
… heard me speak recently have heard me talk about the new data portal that we’re building. And I’ve been eager to …
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Doubling Down on Known Protein Families
… the collective power of more than 26,000 microbiome datasets, all accessible through the publicly available  … Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully crafted the Novel Metagenome … Protein Families (NMPF) Catalog.  “We can now analyze new datasets by comparing against these protein families, or …
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