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Impact of Harvest on Switchgrass Leaf Microbial Communities
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Metagenomes in the Borderline Ecosystems of the Antarctic Cryptoendolithic Communities
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Murine colitis reveals a disease-associated bacteriophage community
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Characterisation and comparative analysis of mitochondrial genomes of false, yellow, black and blushing morels provide insights on their structure and evolution
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A Plant Root Atlas for Tracking Developmental Trajectories
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … on single-cell and spatial transcriptomics technologies. JGI Science Programs Deputy Axel Visel provided a broader … perspective:  “ This exciting work is well aligned with the JGI’s growing efforts in establishing plant and fungal …
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization … drivers of virus-host dynamics in soil microbial communities. … B.S. in Microbiology, Université Blaise …
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Rex Malmstrom
… of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … to culture these microbes in the lab. After joining the JGI, he formed the Microscale Applications group to operate … activities of specific microbial groups within complex communities.  The Microscale Applications group also carries …
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Supercharging SIP in the Fungal Hyphosphere
… aspects of a commonly-used process for studying microbial communities, with results published in the  November 2022 … microorganisms. Because microorganisms live in complex communities, like within soils or the gut, they are … HT-SIP is a capability available to request through  the JGI proposal calls . … Work at Lawrence Livermore National …
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Science Programs
The JGI’s Science Programs offer support to users and their research efforts.  JGI scientists lend their expertise to enhance the … for them. Their concerted efforts help maximize the JGI’s impact in advancing both user science and the DOE …
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Functional Characterization of Two Class II Diterpene Synthases Indicates Additional Specialized Diterpenoid Pathways in Maize (Zea mays)
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Plant–microbiome interactions: from community assembly to plant health
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Genome-reconstruction for eukaryotes from complex natural microbial communities
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