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The Airborne Metagenome in an Indoor Urban Environment
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Olpidium, The Key to the Origin of Terrestrial Fungi
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a link in … habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every … data were generated, bioinformatic tools for binning metagenome data involved with mainly eukaryotic origins were …
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Cultivating Symbiotic Antarctic Microbes
… consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, experimentally demonstrated that … (DP150100244) and the Australian Antarctic Science program (project 4031). The work conducted by the US Department of …
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Extensive Reorganization of the Plastid Genome of Trifolium subterraneum (Fabaceae) Is Associated with Numerous Repeated Sequences and Novel DNA Insertions
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The GC-Rich Mitochondrial and Plastid Genomes of the Green Alga Coccomyxa Give Insight into the Evolution of Organelle DNA Nucleotide Landscape
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Progress Reports: 2002–2020
Report … FY16 Progress Report … FY15 Progress Report … FY14 Progress Report … FY13 Progress Report … FY12 Progress …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… .) This plan aligns the DOE Office of Science user facility with broader national efforts to promote and … the genomes of individual organisms or environmental DNA, and then using advanced capabilities to understand … and help cultivate new user communities. Biomolecular materials initiative. Pairing the JGI’s genomic capabilities …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the … the specialized software and supercomputers behind this project. But every part of this project depends on lakewater samples — so this episode is a …
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You Can Move, But You Can’t Hide
… of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory … currently has more than 700,000 plasmids from genomes, metagenomes and metatranscriptomes. To lower barriers to … used computational resources from the Exascale Computing Project (17-SC-20-SC), a collaborative effort of the U.S. …
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Nikos Kyrpides
… comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes Program since 2011. Prior to joining the DOE … Nayfach S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . …
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Crysten Blaby-Haas
… joined the JGI in 2022 as lead of the Biomolecular Materials Initiative, a partnership between JGI and the … Molecular Foundry, a nanoscale research and knowledge-based user facility at Berkeley lab. She earned her PhD in … she joined LBNL to spearhead the development of a joint user capability between the JGI and Molecular Foundry for …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… ramorum genome. The JGI generated the organism’s DNA code in tandem with a closely-related plant pathogen … engagement activities under the umbrella of the SOD Blitz Project. In hopes of controlling the spread of the disease, … represent the first-ever large-scale “citizen science” project to generate real-time data for modeling and …
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