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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help … analysis identified fungal gene families that help determine if these fungi act as friends or foes. The Impact … by funds to S.Hac from a European Research Council starting grant (MICRORULES 758003), the ‘Priority Programme: …
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Len Pennacchio
In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying … landscape of gene regulatory sequences in the human genome. Understanding how variation in regulatory sequences …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and … onto a larger host — often, a fellow archaeal microbe. Understanding how these hosts and hitchhikers coexist is key for understanding their impact on wider ecosystems, but these …
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Forming Scientific Connections and Building Community
The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … has been an honor and a life changing experience to me. Starting my PhD straight out of undergraduate, I have not …
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Ian Blaby
Since 2019 Dr. Blaby heads the DNA synthesis platform at the Joint Genome Institute, where he leads three groups focused on … archaea and bacteria with a view to developing a deeper understanding of sequence-based gene function. … B.Sc. …
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Benjamin Cole
Dr. Cole is interested in studying how plants interact with their environment. Prior to … Genome Institute, Dr. Cole’s research focus has been on understanding how microbes can colonize plant roots, …
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Special Initiatives & Programs
Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, including awards funded through  BER Funding Opportunity …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome copies, one from each parent. Having three or more genome copies from additional parents or …
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Creating an Energy Market for Miscanthus
… and a potential fuel for the future. But, to be competitive in the market, both energy policy and Miscanthus will need some upgrades. In this episode, hear from scientists working on understanding Miscanthus biology and the economic terrain to …
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Extracting the Secrets of Secondary Metabolites
… for survival, may now be easier to characterize following a proof-of-concept study in which researchers paired … into the insect’s bloodstream that quickly kill the host. Understanding exactly how P. luminescens and its secondary … When it comes to insect killer P. luminescens specifically, understanding its secondary metabolites and their pathways …
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New Research Sheds Light on Diversity in the Deep Sea
Microbial communities living near hydrothermal deep-sea vents hold vast potential for … chemically-rich ecosystems. This means they hold clues for understanding how life thrives in extreme environments. They … be applied to biotechnology and medicine. A more robust understanding of these microbial communities could lead to …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha … projects such as Expression Atlas and PPRD could help with understanding gene functional roles, but the experimental …
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