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Forming Scientific Connections and Building Community
… system for the selection of genes essential for specialized carbon utilization ” Jesica Calderon : “Being a JGI intern … Nandita Nath & W. Berkeley Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan Lavenstein …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to Africa to … initiatives in bioenergy crop improvement and terrestrial carbon transformations.” The JGI’s large-scale call included … of France’s Institut de Biologie. His team proposed to sequence  Chaetoceros microalgae, or diatoms. Through the …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… Phytophtora sojae, which imperils soybean harvests. The subsequent comparative analysis of these two pathogens, led by … of millions of trees in California alone. With the genome sequence in hand, the UC team led the charge to develop … participated in SOD Blitz activity, and these data were subsequently used by three million others in the community. …
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Extracting the Secrets of Secondary Metabolites
… study in which researchers paired CRISPR and CRAGE technologies. While CRISPR (Clustered Regularly Interspaced …
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JGI@25: Strengthening Soybean
… first legume species with a published complete draft genome sequence. At the time, the vital global source of both … of seed oils as biofuel. After analyzing the original sequence, Gary Stacey of the University of Missouri said he … rediscovering genetics, with the evolution of sequencing technologies and the evolution of bioinformatics.”  P. …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… with special skills to break down pollutants and recycle carbon. They were part of an ancient lineage of bacteria to … organisms to swim around. However, genome and metagenomic sequencing conducted by the U.S. Department of Energy Joint …
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Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations
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Transcriptomic Data Sets for Zymomonas mobilis 2032 during Fermentation of Ammonia Fiber Expansion (AFEX)-Pretreated Corn Stover and Switchgrass Hydrolysates
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Webinar: MycoCosm Tutorial
… JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative … Do you accept oomycetes to be proposed for genome sequencing, or only “true fungi”? A(nswer): Our focus is on … and whether they are within DOE mission areas of bioenergy, carbon cycling, and biogeochemistry. This is a great …
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Effects of Polar Light Cycle on Microbial Food Web
… greatly contributes to our larger understanding of carbon and other nutrient cycles on a global scale. Summary … when sunlight is nonexistent, the bacteria are replaced by carbon-fixing archaea. Although Ace Lake was formed from the … over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published in  Microbiome shows …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… the atmosphere as much as 25 times more quickly than even carbon dioxide. The EPA attributes one-fifth of all methane … to provide a cataloged and curated culture and genome sequence resource of rumen microorganisms . Thanks to the … different areas, beyond the project’s initial scope. Sequencing and culturing this vast collection of rumen …
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Four Researchers Join JGI User Executive Committee
… the development of bio-based products and next-generation technologies, and toward a secure energy portfolio for DOE …
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