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SIPs with Standards
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
Sweden or Quebec.  Ecologically, Martin suggests this redundancy is protective, a bit like diversifying an investment … person at the Walnut Creek Marriott the week of September 30 – October 4, 2024.  … The U.S. Department of Energy Joint …
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Marianne Buscaglia
Marianne is an affiliate researcher who uses metagenomics to study giant viruses in cold marine …
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Nandita Nath
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Rex Malmstrom
… and carbon consumption of SAR11 bacteria, the most abundant bacterial group in the ocean. Later during his … His group also handles the Stable Isotope Probing (SIP) Metagenomics pipeline  that reveals in situ functional … the arbuscular mycorrhizal symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A standardized quantitative …
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An Integrated Dataset to Understand Ecosystem Interaction
… managed through human intervention. By leveraging metagenomics, scientists were able to analyze the DNA of … Laboratory (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic …
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Honey Bee Gut Microbiota Divvy Up Dinner
Bifidobacterium strains, on the other hand, are abundant in glycoside hydrolases, and are thus better adapted … including collecting and analyzing the honey bee gut metagenome, which was done with the help of the US Department …
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Fungal Friends or Foes in Plant Roots
… fungi in root mycobiomes weren’t necessarily the most abundant members of these communities. In contrast, many of the … of the key community participants and enabling future metagenomics studies.   … The sequencing project was funded by … Science of the U.S. DOE under Contract No. DE-AC02-05CH11231 within the framework of CSP 1974 “1KFG: Deep-sequencing …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… this complex species and also at the same time, take advantage of what we can do now with genomics to really make … common gardens in Texas. This reciprocal home site advantage is direct evidence of climatic adaptation. The team’s …
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Refining the Process of Identifying Algae Biotechnology Candidates
… simulated summer in Arizona. Scenedesmus  sp. NREL 46B-D3, which thrives both in saltwater and wastewater, was … Efficiency and Renewable Energy (EERE) under Agreements NL0032355 and NL0032266. This work was also completed in part by …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… . The team mined more than 8,500 publicly available metagenome datasets generated from sampling sites around the … co-cultivated with amoeba or with their hosts, though metagenomics is now making it possible to seek out and … As a result, the giant virus protein space grew from 123,000 to over 900,000 proteins, and virus diversity in this …
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When “The Blob” Made It Hotter Under the Water
… as hurricanes and droughts. Another one began in late 2013, when a large patch of warm ocean water about a third the … U.S. Department of Energy under Contract DE-AC02- 05CH11231, the G. Unger Vetlesen and Ambrose Monell Foundations, … grants awarded to S.J.H. S.J.T. was supported by the Danish Research Council (grant DFF-7027-00043B) and CTEK by …
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