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JGI at the AGU Fall Meeting
Register for the meeting here. Here are some sessions of interest (all times in PST unless otherwise noted): … controls of nitrous oxide pulses in rewetted forest soils: An integrated -omic and isotopic approach” 12:39pm … of Arizona (lightning talk): “Effect of drought on soil microbial metabolisms driving carbon allocation and …
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Effects of Polar Light Cycle on Microbial Food Web
Populations of Antarctic lake microbial communities change with the … with light availability. A long-running time-series study offers a first glimpse into a full season’s cycle of this … cycling takes place only on a microbial level. Previous studies focused on the Southern Ocean have found that in …
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2023 Progress Report
… for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic … expertise to support the global research community in studies of complex biological and environmental systems. We …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a recent  … M. polymorpha has been used as a model for evolutionary studies. Its place among early-diverging plant lineages makes it ideal for comparative genomics studies, offering insight into genes critical for roles …
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What Happens To a Rainforest When You Dial Up Drought?
Rainforests store a big fraction of all the carbon on Earth, and soil microbes play a key role in pulling that carbon out of the atmosphere. This episode, researchers take a look at …
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … deployed a pipeline to first target cells from communities of uncultivated microbes, and then efficiently retrieve and … great strides in generating genome sequences for members of the microbial world through bulk community sequencing …
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Fungal Friends or Foes in Plant Roots
… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … example” of how a 1000 Fungal Genomes project can enable studies of plant root microbiome and other microbiomes by … key community participants and enabling future metagenomics studies.   … The sequencing project was funded by the U.S. …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a … and environmental challenges. Viruses are everywhere — in soil, the sea and, of course, the cells of other organisms. … can do. For example, understanding virus-host dynamics in soil microbiomes could allow for more accurate ecosystem …
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When “The Blob” Made It Hotter Under the Water
… impact on marine microbial communities. The Science A team of researchers tracked the impact of a large-scale heatwave … are affected by warming events. More time-series studies could help researchers improve predictive models on … This preliminary model aligns with several other studies on the potential effects of warming oceans on the …
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SIPs with Standards
SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible to … more reusable, and more insightful, for the future of studying microbial communities.   …
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Natural Prodcast Episode 4: Nancy Keller
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Welcome back to Natural … Craig – but forming those concepts of what natural product studies look like. And so, I enjoyed your talk today. It was …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
Congratulations to Susannah Tringe , one of eight scientists and engineers who received the 2020 Ernest Orlando Lawrence Award , one of DOE’s highest honors! Tringe, a microbiologist, was recognized for “advances in sequence-based studies of microbial assemblies, revealing the roles of …
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