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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have … the cells of other organisms. As they infect microbes like bacteria, algae and protists, all kinds of viruses impact … conditions and a specific microbial host to replicate. Sequencing genetic material directly from samples sidesteps …
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample … DNeasy PowerSoil Kits and sent the samples to the JGI for sequencing.  While JGI processed, sequenced, and analyzed … data set on the IMG portal. The class discovered Actinobacteria, Acidobacteria, and Proteobacteria to be the most …
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Bacterial Microcompartments
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers have new insights into how … of that machine — photosynthesizers’ DNA and RNA. These sequences provide a list of machine parts, and an idea of … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… to Tanja Woyke, who has been awarded the van Niel International Prize for Studies in Bacterial Systematics for the triennium 2017-2020! …
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Network Modeling of Complex Data Sets
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Representing sex chromosomes in genome assemblies
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative … called fermentation. To better understand the range of bacteria and archaea that rely on this form of metabolism, … by the United States Department of Agriculture National Institute of Food and Agriculture grant 2018-67015-27495, …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome … whole complex of progenitors and descendant species and, consequently, the evolution of polyploidy.” Evaluating …
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Bacterial Genome Annotation
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A bacterial toolkit for plants
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes … The Impact Despite great strides in generating genome sequences for members of the microbial world through bulk … and was demonstrated using a specific group of marine bacteria called “Vis6” that are found in North Sea algal …
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