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Viruses Reprogram Cells into Different Virocells
… from The Ohio State University and the University of Michigan studying how virus infections cause significant … In  their study , which appeared in  The ISME Journal , they focused on how virus-infected microbes are … team infected the marine  Pseudoalteromonas bacterium with two unrelated viruses: siphovirus PSA-HS2 and podovirus …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our … genetic microdiversity or core metabolic flexibility? … Microbial contributions to soil carbon storage during … symbionts … Elucidation of the gene regulatory networks governing terpenoid-mediated plant environment …
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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … unique makeup of microbe players and the functions they perform, artificially replicating a whole community is … vast array of microbial dark matter. The study took roughly two years to complete, with only about 20,000 metagenomes …
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FICUS-NERSC/KBASE
The mission of the Joint Genome Institute is to serve the scientific … discovery at the DOE Office of Science through high performance computing (HPC) and data analysis.  The DOE Systems … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …
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Finding the Fermenters
… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … of five previously uncharacterized prokaryotes, including two bacteria isolated by their lab. KBase was used to … phenotype and genotype of fermentative prokaryotes on IMG … Publication … Datasets … Datasets … Datasets …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
A two-day kick-off meeting held at Lawrence Berkeley National … from the ACTIVE SITES Research Center (ACSI), the Centre for Water and Environmental Research (ZWU) of the University … in imaging-related technology and instrument-analytical methods.  “The microfluidic devices we recently developed …
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JGI@25: The Little Alga That Could
In honor of the JGI's 25th anniversary in 2022, we have revisited a … 2007 the full genome was sequenced and published in the journal Science . At the time, the project was co-led by Daniel … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference …
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Time‐series metatranscriptomes reveal conserved patterns between phototrophic and heterotrophic microbes in diverse freshwater systems
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Metatranscriptomic Sequencing of Winter and Spring Planktonic Communities from Lake Erie, a Laurentian Great Lake
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A Community Resource for Secondary Metabolite Researchers
… user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … data.   The SMC ( smc.jgi.doe.gov ) is designed with two main objectives. First and foremost, it is a BGC …
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MGM Workshop at Fisabio Summer School 2025
Register here The workshop is addressed to students and professionals of biology, biomedical research, the health … will train participants in state-of-the-art analytical methods in this area, by means of theoretical lectures and seminars as well as practical hands-on sessions in bioinformatics and biostatistics Several sessions will be devoted …
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Tanja Woyke Elected to American Academy of Microbiology
Tanja Woyke , who has been elected to the American Academy of Microbiology (AAM) ! She is among the 68 new Fellows in … research focuses on developing and harnessing single-cell methods to access the genetic material of uncultivated … of energy and environmental genomics.” Along with Woyke, two JGI users were also elected to the AAM: fungal …
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