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… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and … insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … using HMM profiles of protein domains from the pfam database to test the efficacy of a particular kind of deep …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — … Filling in the Plant Tree of Life … Fungal Dataset … Plant Datasets …

… The JGI Engagement Webinar held November 5, 2020 (watch the  video … (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … not sure, although I suspect it’s a combination of those factors. While the plots were irrigated and fertilized to …

… CheckV can help researchers assess virus sequence fragments and data … (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … (from environmental metagenome samples) from IMG/VR , a database that is part of the Integrated Microbial Genomes & …

… The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene … The DNA Synthesis Program plays a central role in advancing functional genomics, … project. These advancements contribute to the development of new biofuels and sustainable biochemicals. The DNA …

… By studying the structure and function of a cyanobacterial protein, researchers have new insights into … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence …

… The JGI was honored to host some of the brightest minds in genetics as part of our  2022 Annual Meeting . The meeting was a … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …

… A genetic architecture that is characteristic of the sex chromosomes of mammals is, for the first time, … pace of breeding. Once plant cultivars are optimized, the knowledge could also help  prevent flowering, which would … This work was supported by the NSF Dimensions of Biodiversity Program …

… A two-day kick-off meeting held at Lawrence Berkeley National … will give us the opportunity to advance unique scientific knowledge and address global challenges.”  During the … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …

… Educational training technologies provide opportunities for students and professors alike The Science In  PLoS Pathogens , a team of … of Science User Facility, and the DOE Systems Biology Knowledgebase (KBase). The JGI and KBase are both supported … MycoEd receives organizational and developmental support from KBase (The …

… With collaborative user projects, the JGI’s Plant Program delves into the … to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … a plant based bioeconomy where plants are a major source of chemical production and contribute to a healthier planet …

… Twice a year, the DOE Office of Science Graduate Student Research … to work with JGI virus researchers and harness the IMG/VR database. “The SCGSR award will further my goal of resolving … methodologies into workflows with the DOE Systems Biology Knowledgebase (KBase) , in collaboration with computational …