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Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure
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Dan Rokhsar
… efforts directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of the Human Genome Project, Professor Dr. Rokhsar ’s team has continued … Publications … Selected Publications …
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John Vogel
… years where he was a driving force behind the development of numerous genomic resources that fostered the widespread … mutant collections, transformation technology, epigenetic analysis techniques) and utilizing these resources to understand genome organization and regulation, abiotic stress …
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Genome Streamlining, Proteorhodopsin, and Organic Nitrogen Metabolism in Freshwater Nitrifiers
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Functional genomics of lipid metabolism in the oleaginous yeast Rhodosporidium toruloides
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Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. … also collaborated to advance computing infrastructure and analysis. This way, JGI users — both primary, … to enable large-scale analysis. The story of a massive metagenome assembly for a time-series experiment from the …
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When “The Blob” Made It Hotter Under the Water
… impact on marine microbial communities. The Science A team of researchers tracked the impact of a large-scale heatwave event in the ocean known as “The Blob.” The … were sequenced by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Codon bias, nucleotide selection, and genome size predict in situ bacterial growth rate and transcription in rewetted soil
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… A special issue of Synthetic Biology celebrates research enabled by the JGI … One review article in the collection, Genomics-enabled analysis of specialized metabolism in bioenergy crops: … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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Analysis of the Phlebiopsis gigantea Genome, Transcriptome and Secretome Provides Insight into Its Pioneer Colonization Strategies of Wood
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Genome analysis of Desulfotomaculum kuznetsovii strain 17T reveals a physiological similarity with Pelotomaculum thermopropionicum strain SIT
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