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How Filamentous Fungi Sense Food
… . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … N. crassa is the model organism for filamentous fungi, all of which contain a wide array of plant cell-wall degrading enzymes (PCWDEs) that allow …
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JGI@25: Solving the Mystery of the Missing Oil
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … his team tracked the thousands of bacterial and archaeal species using a DNA-based array developed at Berkeley Lab. …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into carbon storage   The Science Boggy peatlands, which hold much of the Earth’s carbon as well as material that can be … hills and valleys, on a smaller scale. Depending on the species, some sphagnum may prefer the dryer, more elevated …
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Building Sphagnum Genomic Resources
… Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system … and researchers estimate that they hold about 25 percent of the world’s soil carbon. In high latitudes, sphagnum can … to have two high quality reference genomes for peat-forming species that occupy different microhabitats – Sphagnum …
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Enlarging Windows into Understanding Gene Functions
… in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a dizzying array of combinations, are unremarkable, save perhaps for the … the binding location for most transcription factors in a species,” O’Malley said. “It’s a unique capability; no one …
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Silver age of GOLD introduces new features
… sequencing projects carried out at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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First Monoploid Reference Sequence of Sugarcane
… for the highly complex sugarcane genome . The Science Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple sets of chromosomes (they are “polyploid”) and their complex … platform (http://southgreen.cirad.fr). For the portion of the work conducted by the Joint Genome Institute and the …
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Natural Prodcast Episode 14: Nigel Mouncey
… DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took … get back to a regular schedule. I’m going to kick things off today with my interview with the Director of the Joint … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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Crops as Tough as World Cup Turf
… crops.  One grass they studied just happened to be the same species that covered World Cup pitches in 2022.             …
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Frederik Schulz
… Genome Institute in 2016 and is leading the New Lineages of Life Group. His research is focussed on the discovery of novel bacterial, archaeal and eukaryotic microbes and … metatranscriptomics, single cell genomics and phylogenomics) and machine learning to find novel functions …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… A genetic architecture that is characteristic of the sex chromosomes of mammals is, for the first time, seen in a plant. The Science Sex in plants can be befuddling. Most species are hermaphrodites, expressing both male and female … This work was supported by the NSF Dimensions of Biodiversity Program (DEB-1542509 to S.D., DEB-1542486 to …
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey at Duke University and … a foundation for still larger efforts in diverse plant species beyond models,” he said. Cole annotated cell types … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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