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RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes
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Specialized Plant Growth Chamber Designs to Study Complex Rhizosphere Interactions
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CRAGE-Duet Facilitates Modular Assembly of Biological Systems for Studying Plant–Microbe Interactions
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Microfabrication of a Chamber for High-Resolution, In Situ Imaging of the Whole Root for Plant–Microbe Interactions
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Quantitative genetic-by-soil microbiome interactions in a perennial grass affect functional traits
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Spatially structured bacterial interactions alter algal carbon flow to bacteria
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … candidate bioenergy feedstock crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a … large polyploid genome, which means most genes are found as multiple copies across the chromosomes. In a follow-up study …
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A User-Centered Approach to Accessing JGI Data
… through the plant portal  Phytozome . Now the portal offers a way for users to more easily access public data sets through a common set of metadata. For Steve Wilson, JGI’s Systems Engineering … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics as part of our  2022 … featured keynote speeches from Nobel Laureate Jennifer Doudna of the University of California, Berkeley and Berkeley … Jill Banfield approached Doudna with repeated genetic sequences (already known as CRISPR) that came up in her …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into carbon storage   The Science Boggy peatlands, which hold much of the Earth’s carbon as well as material that can be … Laboratory, and the HudsonAlpha Institute for Biotechnology sequenced sphagnum  genomes from plants selected by a team …
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DAS Tool for Genome Reconstruction from Metagenomes
… developed and improved upon a tool that combines existing DNA sequence binning algorithms, allowing them to … been utilizing metagenomics as a way to study a collection of hard-to-culture microbes, but the efficacy of this … because of its capacity to harness the strengths of multiple binning algorithms. They added that DAS Tool’s …
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Climate-driven divergence in plant-microbiome interactions generates range-wide variation in bud break phenology
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