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The genome of Syntrophomonas wolfei: new insights into syntrophic metabolism and biohydrogen production
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Genomic and proteomic biases inform metabolic engineering strategies for anaerobic fungi
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The genome of Pelobacter carbinolicus reveals surprising metabolic capabilities and physiological features
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Novel Insights into the Diversity of Catabolic Metabolism from Ten Haloarchaeal Genomes
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Genome Sequencing Suggests Diverse Secondary Metabolism in Coral-Associated Aquimarina megaterium
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Better Genome Editing for Bioenergy
… A team has optimized a crucial part of CRISPR-Cas9 … lipolytica work? The project was a multi-institutional effort led by then-graduate student Cory Schwartz and his … included researchers at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User …
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Genomics, Exometabolomics, and Metabolic Probing Reveal Conserved Proteolytic Metabolism of Thermoflexus hugenholtzii and Three Candidate Species From China and Japan
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Extracting the Secrets of Secondary Metabolites
… CRAGE-CRISPR combo helps further demystify biosynthetic gene … While CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is the leading tool for accurately editing genomes, its effectiveness has historically been limited due … Institute, a DOE Office of Science User Facility, is supported under contract DE-AC02- 05CH11231. …
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what … microbes govern ecosystems. These organisms carry out important environmental processes like  carbon fixation , … brings several of these approaches together into the same workflow, then uses a machine-learning model to give its …
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Genome‐wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and … to technical limitations and the sheer complexity of plant genomes. Now, with improvements to DNA Affinity Purification … this advancement holds the potential to expand opportunities for bioenergy and bioengineering applications. …
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