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MVP: a modular viromics pipeline to identify, filter, cluster, annotate, and bin viruses from metagenomes.
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iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria
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MArVD2: a machine learning enhanced tool to discriminate between archaeal and bacterial viruses in viral datasets
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W. Berkeley Kauffman
Berkeley is responsible for receiving and processing user samples. His R&D work focuses on the development of … in the areas of metagenomics, single-particle genomics, and metabolic engineering. …
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A Natural Mechanism Can Turbocharge Viral Evolution
Understanding how a fundamental mechanism of evolution allows microbes … membrane. Two decades ago, a team discovered a group of viruses that had in their genomes a surprising tool: a … DGR could mutate the virus’ tail fiber proteins, and thereby allow them to embrace different cells. Since that …
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You Can Move, But You Can’t Hide
… identify mobile genetic elements like plasmids and viruses. The Science Mobile genetic elements (MGEs) are … forms of MGEs are viruses and plasmids. They can be found in virtually all of Earth’s ecosystems. A software tool  … and their genetic sequences. The software was created by researchers under the direction of Microbiome Data …
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2025 NeLLi Symposium
Registration and Agenda Coming Soon!  Hosted by the DOE Joint Genome Institute, the … from the identification of microbial novelty to assigning metabolic and functional capabilities. Take part in the …
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Lineage-specific chromatin signatures reveal a regulator of lipid metabolism in microalgae
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The Architecture of Metabolism Maximizes Biosynthetic Diversity in the Largest Class of Fungi
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Diversity and evolution of secondary metabolism in the marine actinomycete genus Salinispora
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Functional genomics of lipid metabolism in the oleaginous yeast Rhodosporidium toruloides
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Wide diversity of methane and short-chain alkane metabolisms in uncultured archaea
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