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Micro-Scale Applications Group
… technology in order to enhance the quality of single-cell genomes and directly link functional information with individual cells. Research Team    … DNA amplification, and sequence analysis to recover the genomes of uncultivated microbes. We also apply labeling …
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Scaling High‐Resolution Soil Organic Matter Composition to Improve Predictions of Potential Soil Respiration Across the Continental United States
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
… To engineer yeast to do more, and understand genomes in general, Jef Boeke, Weimin Zhang (NYU Langone … the goal is to create an entirely human-generated yeast genome. …
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Richard Fox
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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons on … one of the first students to participate in the DOE Joint Genome Institute (JGI)-UC Merced internship program, … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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Annotation survey and life-cycle transcriptomics of transcription factors in rust fungi (Pucciniales) identify a possible role for cold shock proteins in dormancy exit
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A One-Stop Shop for Analyzing Algal Genomes
… genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … and enthusiasts to look deep into more than 100 algal genomes, compare them, and visualize supporting experimental … Understanding the genetic underpinnings responsible for these traits takes us closer to harnessing algae for …
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An Automated Tool for Assessing Virus Data Quality
… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … virus sequences vary widely. In a previous effort, an international consortium recommended specific … the virus-host boundary clearly defined using functional annotation methods, it was possible to distinguish between …
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Biodesign
…   The Joint Genome Institute's Biodesign Platform capabilities support researchers exploring how to … done by synthesizing genes, pathways, and whole chromosomes for bioenergy, nutrient cycling and bioproduct … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination and Golden Gate …
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Microbial Genomics & Metagenomics (MGM) Workshop
… has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on … designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and interpretation of sequence …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida … cattails. In 2018, the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … provides the only known reference microbiome data sets for the Loxahatchee Refuge,  was published in the journal  …
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Complete Genome Sequence for Asinibacterium sp. Strain OR53 and Draft Genome Sequence for Asinibacterium sp. Strain OR43, Two Bacteria Tolerant to Uranium
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