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Pinning Down a Piece of Photosynthesis
By studying the structure and function of a cyanobacterial protein, researchers have new insights … and cyanobacteria create the air we breathe and the fuel for food webs as they turn carbon dioxide and water into … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
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Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies
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Haplotype‐resolved genome assembly of Populus tremula × P. alba reveals aspen‐specific megabase satellite DNA
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A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights into … gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … detected in the Washburn sediments and based on metabolic reconstructions, the team has two main hypotheses: the novel …
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BdCESA7, BdCESA8, and BdPMT Utility Promoter Constructs for Targeted Expression to Secondary Cell-Wall-Forming Cells of Grasses
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David Goodstein
… focused on building tools to facilitate expert curation of human gene models in support of JGI’s contributions to … et al., 2023.The Chlamydomonas Genome Project, version 6: Reference assemblies for mating-type plus and minus strains … plant genomics.      Nucleic Acids Research 40, D1178. Publications … Scientific Advisory Board member, InterMine …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
Journal publication caps JGI pilot project with fledgling Florida … school scientists. The Florida Everglades evokes images of fanboats skimming over swamps, while alligators peer … cycle. Their data report, which provides the only known reference microbiome data sets for the Loxahatchee Refuge,  …
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NeLLi — Symposium on New Lineages of Life
The DOE Joint Genome Institute hosted the hybrid “NeLLi 2023 Symposium” delving into the most recent expansions of the Tree of Life and latest discoveries toward the … novel microbial lineages, leading to a new appreciation for the extent of diversity. The phylogenetic and functional …
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root …
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A Collaboration to Improve Plant Genome Annotations Across Species
… which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … studied? Avinash:   JGI puts huge efforts into generating reference genomes for new species allowing it to fill gaps … comparable study, where plants were subjected to three nitrogen sources (urea, ammonium, and nitrate) as the …
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