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How Filamentous Fungi Sense Food
… a job site for a task that requires a flathead screwdriver with a full toolbox including Phillips and specialty … to mention Allen wrenches. The fungi are similarly armed with a variety of PCWDEs to first break down the components … them into simple sugars. More importantly, when faced with a veritable buffet of carbon sources, these fungi …
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Uncovering Novel Genomes from Earth’s Microbiomes
… of the microbial communities in the environmental samples without needing to isolate individual organisms, using … (MAGs) directly from sequenced environmental samples without needing to cultivate the microbes in the lab,” noted … the catalog in his own research on how microbes respond to climate change. “With this dataset I can see where every …
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Silver age of GOLD introduces new features
… the appropriate contextual information, or metadata, stored with them. GOLD provides manually curated metadata resources … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked with public resources including NCBI Taxonomy and various …
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Making a Lichen Together
… Photobiont and fungus (mycobiont) live intertwined, with the photobiont transferring part of its … bioengineering symbiotic microbial consortia for bioenergy crops. And because lichens are dominant carbon and nitrogen … . To explore the genomes, Armaleo and colleagues worked with Igor Grigoriev, the Fungal & Algal Program lead at the …
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Webinar: SIP technologies at EMSL and JGI
… EMSL such as DNA-SIP, Protein SIP, Flux Balance analysis with metabolites, Isotope Ratio Mass Spectrometry, NanoSIMS, … so you’d need at least 2 micrograms in the sample to start with. 2. Q: What would a typical turnaround time be for data … the isotopomers. We estimate the overall atom enrichment within the bulk community DNA, and that gives us a rough …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… of California (UC), Merced graduate student working with  Susannah Tringe , JGI’s User Programs deputy and head … composition and metabolism, work on which she is expanding with her study of microbes in California’s manmade water …
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Evolution of a Fungal Gene Expression Regulator
… help researchers find ways to protect poplar and other crops being considered for bioenergy feedstock development. Summary With the aim of producing at least one reference genome for …
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From Competition to Cooperation
… independently evolved to establish symbiotic relationships with plants (mycorrhizae), and particularly how fungi that … allow host plants, such as candidate  bioenergy feedstock crops, to acquire nutrients. Additionally, these results … species include 29 newly-sequenced mycorrhizal genomes. With so many fungal  genomes , the team conducted a …
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JGI on the 2020 Highly Cited Researchers List
… breeding programs of related candidate bioenergy feedstock crops such as sugarcane and sorghum.     …
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Root cap cell corpse clearance limits microbial colonization in Arabidopsis thaliana
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Natural Prodcast Episode 20: Brian Bachmann
… First and foremost, our interview this week is with Professor Brian Bachmann from Vanderbilt University’s … and I are old friends and colleagues, having both graduated with our PhDs from Craig Townsend’s lab at Johns Hopkins. … and I can say without reservation that Brian is one of the smartest people I’ve ever had the pleasure of getting to …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… ch allenges. Methane emissions are a massive factor driving climate change. According to the Environmental Protection … livestock — specifically, from the methane-making microbes within their rumen. There is another climate-minded reason for studying rumen: Livestock live off …
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