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Cultivating Symbiotic Antarctic Microbes
The Impact The Antarctic lakes are a “treasure trove” of unknown microbes that play critical roles in … consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples … Metagenomes from enrichment cultures were sequenced and assembled by the JGI. From these assemblies, complete or …
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The More the Merrier: Making the Case for Plant Pan-genomes
… the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two … plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … for  B. hybridum and  B. stacei , as well as multiple lower quality genome assemblies for all three grasses. With these …
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have revisited a … genes involved in agronomic traits related to nutritional quality and disease resistance  due to the sequence’s … Sainsbury Institute, by annotating not just one but three genomes for P. pachyrhizi , which are available on MycoCosm …
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The first complete human genome
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … data were generated, bioinformatic tools for binning metagenome data involved with mainly eukaryotic origins were …
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MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm
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The Genome of Akkermansia muciniphila, a Dedicated Intestinal Mucin Degrader, and Its Use in Exploring Intestinal Metagenomes
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Learning to Look
… “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … are filamentous viruses with small, single-stranded DNA genomes and a unique chronic infection cycle. “We’re not … search tool combed through more than 70,000 microbial and metagenome datasets, ultimately identifying more than 10,000 …
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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
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Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
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The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation
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Genome sequence of Nitrosopumilus adriaticus CCS1 assembled from an ammonia-oxidizing enrichment culture
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