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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… in a single drop of water could outnumber a small city’s population, the number of viruses in the same drop—the vast … recent study  published in the journal  Nature , a team led by researchers at the U.S. Department of Energy (DOE) Joint … available but also complementary single-cell sorting and sequencing of viruses together with their unicellular …
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Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium distachyon
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Biotech Partners Summer Intern Co-Authors NAR Paper
… program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates … to the Genomes OnLine Database (GOLD) administered by the DOE JGI. T.B.K Reddy, Kaushal‘s mentor, described his … reviewed and assigned NCBI taxonomy name and IDs for nearly 20,000 public/private mtagenome biosamples in GOLD. “Besides …
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A Complex Confection Decoded: Sugarcane Reference Genome
… The Science Considered the world’s most harvested crop by tonnage, sugarcane accounts for 80% of global sugar … partly enabled by the JGI’s Community Science Program; in 2018, a monoploid reference sequence of sugarcane was published as a step forward in this effort. Sequencing and assembling the genome required a custom …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… Earth conditions. The Science Through a combination of sequencing tools and techniques applied to samples collected … found in iron-oxide microbial mats. The reddish hues caused by the presence of iron led Inskeep and his colleagues to … JGI’s Community Science Program , the team used metagenome assemblies, transcriptomes and single amplified genomes from …
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How Filamentous Fungi Sense Food
… model fungus  Neurospora crassa . The Science A team led by researchers at the University of California, Berkeley … ENCODE proposal was  recently published in the  Proceedings of the National Academy of Sciences . Researchers … and optimized by Ronan O’Malley, who leads the JGI’s Sequencing Technologies group. DAP-seq allowed the team to …
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The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory.
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Chromosome-scale Genome Assembly of the Most Abundant Ectomycorrhizal Fungus Cenococcum Geophilum Reveals Massive TE Expansion and RIP Defense Mechanism
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The Expanding Universe of Methane Metabolisms in Archaea
… Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. Department of Energy (DOE) Joint Genome … closes on March 11, 2019. Novel Yellowstone archaeon belongs to Korarchaeota Drs. Luke McKay and William Inskeep are … Microbiology . Their study focuses on the discovery of new populations within the Korarchaeota, one of which contains …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… of the E. grandis reference genome, an international effort by a team that included researchers at the DOE Joint Genome … DOE’s Joint BioEnergy Institute (JBEI), the JGI worked on resequencing several eucalypt genomes to establish the … tissues of C. citriodora . From these samples, a total of 127 TPS loci were found, many of which had high sequence …
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A telomere-to-telomere genome assembly resource of Bipolaris sorokiniana, the fungal pathogen causing spot blotch and common root rot diseases in barley and wheat
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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute … in human and mouse triglyceride metabolism. He is funded by DOE and through continued competitive grant support from … Genomic Technologies. oClick to learn more about the offerings and capabilities we offer JGI users to help advance …
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