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Forming Scientific Connections and Building Community
This year the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … and also made new friends while working on their summer projects. Watch the short video here to see what they had to … Sajeet Haridas & Asaf Salamov Project: “ Improving the JGI fungal mitochondrial annotation pipeline ” Anna Kucherova : …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
A nuanced understanding of peat moss drives insight into carbon storage   The Science Boggy peatlands, which hold much of … change. Researchers at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … HudsonAlpha Institute for Biotechnology sequenced sphagnum  genomes from plants selected by a team from Duke University, …
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NeLLi — Symposium on New Lineages of Life
The DOE Joint Genome Institute hosted the hybrid “NeLLi 2023 Symposium” delving into the most recent expansions of the Tree of Life and latest discoveries toward the … Program Tanja Woyke, Microbial Program Robert Bowers,  User Project Coordination Rekha Seshadri,  Functional Annotation …
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Micro-Scale Applications Group
The Micro-Scale Applications group explores the genetic makeup of natural microbial … technology in order to enhance the quality of single-cell genomes and directly link functional information with … DNA amplification, and sequence analysis to recover the genomes of uncultivated microbes. We also apply labeling …
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CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner
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Finding the Fermenters
… prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in environments with … including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … than 400 cultured rumen prokaryotes from the  Hungate1000 project . They also used the tool to predict possible …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
For the first time in several years, the DOE Joint Genome Institute hosted several UC Merced students this past … and their JGI mentors are listed below, along with their project focus areas: Undergraduate Interns Andrew Lin and … Kamel, A Comparative Analysis of Metabolic Pathways in Fungal Pathogens Shayna Bennett and mentor Robert Bowers, …
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Dealing with Drought: Uncovering Sorghum’s Secrets
Laboratory, and the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … in Sorghum (EPICON) is a five-year, multi-institution project funded by the DOE Office of Biological and … under three watering conditions, and then collected root, leaf and rhizosphere (soil surrounding the root) samples …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … to terrestrial habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic … record of land plants and evolved in early microbial biocrust environments.     … The U.S. Department of Energy Joint …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The Science … (Nachwuchs-gruppe “Dr. Alexander Probst”), and the NOVAC project of the German Science Foundation (grant number DFG … CRISPR arrays of a highly abundant carbon fixer in Earth’s crust”. The work conducted by the U.S. Department of Energy …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have … trace its origins, the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US Department of … engagement activities under the umbrella of the SOD Blitz Project. In hopes of controlling the spread of the disease, …
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Dan Rokhsar
Dr. Rokhsar joined the DOE Joint Genome Institute in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed … After successful completion of the human genome project, Professor Dr. Rokhsar ’s team has continued to …
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