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Assemblathon 1: A competitive assessment of de novo short read assembly methods
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Global overview and major challenges of host prediction methods for uncultivated phages
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An expanded evaluation of protein function prediction methods shows an improvement in accuracy
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How Filamentous Fungi Sense Food
… networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the University of … and decide on the order in which this fungus breaks down plant cell wall materials including lignin, cellulose and … importantly, when faced with a veritable buffet of carbon sources, these fungi detect which complex chains are …
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First Monoploid Reference Sequence of Sugarcane
… a reference for the highly complex sugarcane genome . The Science Most species are diploids and have two sets of … breeding in these crops. For diploid species, sequencing programs generally focus on a genotype with two identical … crop that very efficiently converts solar energy into plant biomass, which can then be crushed to extract the …
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Fungus Fuels Tree Growth
… growth of poplar, a potential biofuel feedstock.     The Science The fungus  Mortierella elongata enjoys a dual … organic matter, or as an endophyte, living between a plant’s root cells. The fungus is almost always found among … as secreted proteins. However,  M. elongata  seems to encourage the plant to have leakier cell walls and weaker …
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IMG 4 version of the integrated microbial genomes comparative analysis system
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IMG/M: integrated genome and metagenome comparative data analysis system
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IMG: the integrated microbial genomes database and comparative analysis system
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The integrated microbial genomes system: an expanding comparative analysis resource
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JGI@25: From Life at the Extremes to Editing Genomes
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense collection …
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Learning to Look
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an algorithm that a … Simon Roux, a JGI research scientist in the  Environmental Genomics group . Training the Search Tool Inoviruses are … result of this hidden diversity of inoviruses now overhauls our perception of this virus group – from minor curiosities …
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