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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… the program’s inception. In 2014, JGI’s Zhong Wang and Science Programs Deputy Axel Visel teamed with University of … staff, Mouncey explained: “One of the hallmarks of JGI is our diverse workforce and our diverse collaborators around the world. That said, we …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… PacBio reads (i.e., reads with very low error rate), so our pipeline performs long-reads-only assemblies and not … Depending on the project setup, we can include as part of our data analysis plan mapping of short-reads datasets … A:  Long-read metatranscriptome / RNA metagenomes are on our radar, but we don’t offer these at this time. Q:  How …
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2022 Progress Report
… Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision The … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Lawrence Berkeley National … (Berkeley Lab), is to become the leading integrative genome science user facility enabling researchers to solve the …
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Learning to Look
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an algorithm that a … result of this hidden diversity of inoviruses now overhauls our perception of this virus group – from minor curiosities … tools in CRISPR-Cas applications, but we are limited in our predictive methods to discover new anti-CRISPRs,” said …
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JGI@25: Stories from Intern Alumni
… revisiting a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … share how these experiences have influenced their career journeys.     …
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Crops as Tough as World Cup Turf
… In our warming world, we’ll need corn, sorghum and other crops …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… revisiting a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … poop.  “As an engineer, I think of poop as a biotech resource,” O’Malley said as she opened her talk at the  2022 …
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Sequencing Submission Requirements for DNA Synthesis
… Annotated GenBank File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an open source desktop application written by M. Wayne Davis or … How To Use ApE To save your ApE file as a Genbank file, simply go to File -> Save As …
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An Earth Month Look at Sustainability Efforts at the JGI
… for the wider Berkeley Lab. “We’re shifting now to our net-zero strategy. And so we’re looking at the overall greenhouse gas impacts from all of our operations,” said Brie Fulton, program manager for  … stations, rather than under desk trash bins . These encourage everyone to sort all waste into compost, recycling …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Path for Metagenomics Researchers Building upon these resources, KBase, a multi-institutional collaborative knowledge … a genome or MAG and press a button to build a model from our database of mappings between biochemical reactions and …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … the human language—are well positioned to help enhance our understanding of life’s genomic code, advancing DOE … strategy. Imagine you’re at an arcade and need to convert your money into tokens to play the various machines. You’d go …
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JGI@25: Studying Sorghum’s Survival Skills
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … the world, sorghum’s potential to adapt and thrive in our changing climate has earned it a place on the JGI’s …
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