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Expanding Virophage Diversity
Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … work also used resources of the National Energy Research Scientific Computing Center (NERSC) , which is supported by …
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David Goodstein
With a background in experimental and computational surface … plant genomics.      Nucleic Acids Research 40, D1178. Publications … Scientific Advisory Board member, InterMine …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… exchanging ideas, forming collaborations, and charting the future of microbiome science. Organizers The EcoFAB 2025 …
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What Happens Underground Influences Global Nutrient Cycles
… features prominently among the eleven proposals selected with four focused on biofuels and bioproducts. For example, … alga  Chlamydomonas reinhardtii , one of the JGI’s Flagship genomes. She and her colleagues have generated a … being conducted through the  Belowground Biogeochemistry Scientific Focus Area (SFA), supported by the Terrestrial …
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Game On: High School Students Drive Everglades Metagenomics Study
The course had a defined set of objectives, and started with an image of a spoonful of dirt with the question: Do … as a class, the students learned about how to write a scientific paper. They wrote, edited, and rewrote a … students now feel more empowered and equipped for their future research endeavors.” The students were able to do …
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Toward More Efficient Artificial Photosynthesis
… have developed a platform that mimics chloroplast function within a cell-sized system. The Impact Photosynthesis … fixing enzyme in nature. The library provided the Erb lab with enzymes that led to a previously reported synthetic … and by the French Government ‘Investments for the Future’ Programme, University of Bordeaux Initiative of …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… some archaeal hosts and their hitchhikers. The Science Within the archaeal domain, there is a group of tiny … are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of … Lawrence Berkeley National Laboratory’s Sustainable Systems Scientific Focus Area funded by the US Department of Energy …
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JGI@25: Studying Sorghum’s Survival Skills
… biofuels thanks to its drought and flood hardiness. Even with little water, full sunlight and hot temperatures, … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have … this time aligning it with over 50 other diverse sorghum genomes. Deep sequencing and genetic linkage analysis …
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JGI at the AGU Fall Meeting
This year the AGU Fall Meeting, with the theme “Science is Society,” hosts sessions in New … proposal: Maximize Your Research by Harnessing Multiple Scientific User Facilities in One Proposal via FICUS … context for thousands of newly sampled microbial genomes from North American watersheds (Invited)” 4pm CST …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… a feedstock for biomass-based biofuel production. As seen with many commonly cultivated commercial crops such as … for selection to improve biofuel yield through a changing future. Switchgrass has multiple naturally occurring ploidy … when switchgrass (and by extension similar taxa) are faced with pronounced environmental fluctuations. New findings …
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A Community Resource for Secondary Metabolite Researchers
… an interactive public database for the research community. With more than 13 million BGCs in the catalog at the time of … metabolites portal within the Integrated Microbial Genomes and Microbiomes (IMG/M) system known as IMG-ABC. … and viral BGC sequences. Expansion of the SMC to include fungal, plant, viral, and metagenome data is currently …
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JGI-UC Merced Interns Share Their 2021 Experiences
… interns from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research projects, … embark on a career in genomics and to help foster a diverse future workforce in science. To learn more about each … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional exploration of Phage Impact on …
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