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Mike Sneddon
… and bioinformatics annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled … software, compute, and AI for large-scale genomics and lab informatics. Prior to joining JGI in late 2025, he served as Director of Scientific …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… Hear more about what they learned from working with their JGI mentors, what challenges they overcame, and what new … school.  The interns from this cohort and their respective JGI mentors are: Ruoxi Zhao and mentor Margot Bezrutczyk … learned at the JGI is how to really work in the government lab. And I find this really valuable because in this time …
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Acute Limonene Toxicity in Escherichia coli Is Caused by Limonene Hydroperoxide and Alleviated by a Point Mutation in Alkyl Hydroperoxidase AhpC
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Viruses Reprogram Cells into Different Virocells
… Howard-Varona, a postdoctoral researcher in Sullivan’s lab. Their research was enabled in part by the  Facilities … U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … project. For this project, RNA sequencing was done by the JGI, and proteomics and metabolomics analysis and microscopy …
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Tracing the Evolution of Shiitake Mushrooms
… raphanica, which has been able to adapt to habitats from Alabama to Brazil, suggesting that the same decay-related … Collecting and analyzing these samples was a global collaboration that brought together 39 researchers from eight … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… decades to develop new crops. One example is an ongoing collaborative effort to improve the emerging bioenergy crop … gardens located in eight states spread across 1,100 miles. Switchgrass is a perennial grass that quickly … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… P­­lant Gene Expression Center, Pacific Northwest National Laboratory, and the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … crops. For that reason, its genome was sequenced by the JGI in 2009 and it is considered to be a Flagship Plant. By …
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MycoCosm portal: gearing up for 1000 fungal genomes
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Complete genome sequence of Allochromatium vinosum DSM 180T
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Synthetic biology open language (SBOL) version 3.0.0
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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome Analysis group. … in human and other vertebrate genomes. When he joined the JGI, he worked as a project scientist and then as a research … Trust Sanger Institute, UK and Lawrence Berkeley National Lab …
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Complete genome sequence of Anaerococcus prevotii type strain (PC1T)
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