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A Bioinformatician's Guide to Metagenomics
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Genome organization and botanical diversity
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Unveiling plasmid diversity in nature
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Expanded genome and proteome reallocation in a novel, robust Bacillus coagulans strain capable of utilizing pentose and hexose sugars
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IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata.
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IMG/VR
JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database dedicated to viral genomes assembled from metagenomes. He also …
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Calculating the Costs of Multiple Switchgrass Gene Copies
Scientists have discovered that the candidate bioenergy feedstock switchgrass has adapted … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered … subsequently represent a valuable breeding resource for expanding the range of suitable growing conditions and …
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Clarence Le
Clarence is an affiliate researcher who identifies and analyzes novel clades of RNA viruses and determines novel viral gene functions that may impact hosts and host populations. …
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User Support
The JGI Project Management Office carries out a number of activities to facilitate world-class science. DOE JGI Project Managers …
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CSP Functional Genomics
The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them … function.  The emphasis is on projects leveraging JGI’s DNA synthesis and ‘omics capabilities to enhance …
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Understanding Wildfire Recovery, Starting in Soil
A metagenomic look at the soil microbes present a year after a wildfire. The … and nitrogen, paving the way for future plants and trees to grow. However, fire changes the microbes within the soil. … and growth.  This study builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful …
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Informatics Advisory Committee
The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. The IAC is chartered to render advice, …
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