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Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert
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Adaptation to Environmental Extremes Structures Functional Traits in Biological Soil Crust and Hypolithic Microbial Communities
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Gallionella and Sulfuricella populations are dominant during the transition of boreal potential to actual acid sulfate soils
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Microbial sensitivity to temperature and sulfate deposition modulates greenhouse gas emissions from peat soils
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Short-Term Nitrogen Fertilization Affects Microbial Community Composition and Nitrogen Mineralization Functions in an Agricultural Soil.
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You Can Move, But You Can’t Hide
Lead Nikos Kyrpides at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … that happen between tiny organisms (microbes) located in soils and water. MGEs like viruses and plasmids drive … Office of Biological and Environmental Research (BER) (89233218CNA000001 to L.A.N.L., DE-AC05-00OR22725 to O.R.N.L., …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… version of a specific chemical, where ordinary Carbon-12 atoms are swapped for the heavier, non-radioactive isotope … an environment. For example, SIP experiments can show how soil microbes cycle nitrogen and carbon, or how freshwater … proposal calls to the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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IMG/VR
JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates … of IMG/VR to browse and search through the more than 2 million viral sequences available in IMG/VR v3. …
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High-quality PacBio draft genome sequences of 17 free-living Bradyrhizobium and four related Nitrobacteraceae strains isolated from arid soils in the Santa Catalina Mountains of Southern Arizona
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JGI@25: From Life at the Extremes to Editing Genomes
… to seven. Doudna was recognized for her work on CRISPR-Cas9, technology described by the Nobel Foundation as having “a … , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense collection of publicly accessible … is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine in Iron …
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Microbial Genomics & Metagenomics (MGM) Workshop
… has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on … designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and …
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Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative
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