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Draft genome sequences of Arthrobacter sp. AZCC_0090 and Mycobacterium sp. AZCC_0083 isolated from oligotrophic subsurface forest soil in the Santa Catalina mountains of Southern Arizona
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How to Target a Microbial Needle within a Community Haystack
… and then efficiently retrieve and characterize their genomes. The Impact Despite great strides in generating … bacteria called “Vis6” that are found in North Sea algal blooms. The workflow starts by tagging specific cells using … of the sequences from a bulk metagenome, to just over 50 percent of the targeted metagenome sequence reads. This …
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What Happens Underground Influences Global Nutrient Cycles
Molecular Sciences Laboratory (EMSL) and the  DOE Joint Genome Institute (JGI)—have selected 11 proposals for … (BER), Brodie and his colleagues have been running a soil-warming experiment in the Sierra Nevada mountain range … below the ground, influencing the production of microbial greenhouse gases and volatile organic compounds. This was …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… an environment. For example, SIP experiments can show how soil microbes cycle nitrogen and carbon, or how freshwater … proposal calls to the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … easier to compare?” said Malmstrom, who worked with JGI Metagenome Program head Emiley Eloe-Fadrosh to host researchers …
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Natural soil microbiome variation affects spring foliar phenology with consequences for plant productivity and climate‐driven range shifts
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Members of the Genus Methylobacter Are Inferred To Account for the Majority of Aerobic Methane Oxidation in Oxic Soils from a Freshwater Wetland
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Detection of short-term cropping system-induced changes to soil bacterial communities differs among four molecular characterization methods
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Targeted and shotgun metagenomic approaches provide different descriptions of dryland soil microbial communities in a manipulated field study
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Metagenomes from Experimental Hydrologic Manipulation of Restored Coastal Plain Wetland Soils (Tyrell County, North Carolina)
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Contrasting Community Assembly Forces Drive Microbial Structural and Potential Functional Responses to Precipitation in an Incipient Soil System
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Metatranscriptomics sheds light on the links between the functional traits of fungal guilds and ecological processes in forest soil ecosystems
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Increased signal-to-noise ratios within experimental field trials by regressing spatially distributed soil properties as principal components
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