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Doubling Down on Known Protein Families
… diversity is wilder than ever. Imagine researchers exploring a dark room with a flashlight, only able to … genes from isolates, there isn’t much scientists can tell about its function or its origin. As a result, these genes … explained. “That is definitely material that the scientific community now can use further. Let’s say somebody …
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A One-Stop Shop for Analyzing Algal Genomes
… is one of the largest data repositories of its kind, with an interactive browser that allows algal scientists and … genome portal reinforces the JGI’s new strategic focus on exploring algal biology, diversity, and ecology. PhycoCosm has many components that make it useful for scientific inquiry: it shows a full phylogenetic tree of …
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A One-Stop Shop for Analyzing Algal Genomes
… is one of the largest data repositories of its kind, with an interactive browser that allows algal scientists and … genome portal reinforces the JGI’s new strategic focus on exploring algal biology, diversity, and ecology. PhycoCosm has many components that make it useful for scientific inquiry: it shows a full phylogenetic tree of …
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Multilevel analysis between Physcomitrium patens and Mortierellaceae endophytes explores potential long‐standing interaction among land plants and fungi
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Boosting Small Molecule Production in Super “Soup”
… and so one of the things that I think is so special about this collaboration is that we’re doing work in yeast, … start of a beautiful collaboration,’” Alper said. “We’re exploring not just what can be enabled by this technology, … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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Informatics Advisory Committee
The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. The IAC is chartered to render advice, … the effective management and strategic objectives for the JGI’s data science, informatics and information technology …
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Uncovering Novel Genomes from Earth’s Microbiomes
… of the microbial communities in the environmental samples without needing to isolate individual organisms, using … she said. Listen to study co-author Dan Udwary talk about genome mining using the GEM catalog in  this episode … work also used resources of the  National Energy Research Scientific Computing Center (NERSC) , another DOE Office of …
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Exploring the limit of metazoan thermal tolerance via comparative proteomics: thermally induced changes in protein abundance by two hydrothermal vent polychaetes
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Sphingomonas palmae sp. nov. and Sphingomonas gellani sp. nov., endophytically associated phyllosphere bacteria isolated from economically important crop plants
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, … Most of those researchers send their samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks through …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also holds a joint appointment with … an early algorithm and developing it in order to talk about the subgenome identity.”  These days, Session is … as well as modifying this method to study other types of problems surrounding differential distribution of repeats in …
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Combating a Global Threat to a Clonal Crop: Banana Black Sigatoka Pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) Genomes Reveal Clues for Disease Control
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