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New Research Sheds Light on Diversity in the Deep Sea
… deep-sea vents hold vast potential for bioenergy.   The Science Hydrothermal vents are ocean-floor openings in the … the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley … the communities studied. The datasets are available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) …
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A Complex Confection Decoded: Sugarcane Reference Genome
… can work toward advancing sugarcane biotechnology. The Science Considered the world’s most harvested crop by … The Impact In providing a reference sugarcane  genome , the JGI provides foundational genetic information that crop … Development (CIRAD), and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling
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Genome and transcriptome analysis of the lignite-degrading Trichoderma cf. simile WF8 strain highlights potential degradation mechanisms
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Yasuo Yoshikuni
Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since 2015. The mission of this program is … synthesis, strain engineering, and biosystems design for DOE-mission-relevant discovery and applications. This … has supported over 250 projects since it started. At the JGI, Dr. Yoshikuni also manages the Synthetic Biology …
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Tracking of enzymatic biomass deconstruction by fungal secretomes highlights markers of lignocellulose recalcitrance
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Metabolomics
Metabolomics strengthens -omics technologies at the JGI by identifying the actual molecules present in an … systems, sheds light on nutrient cycling, and leads to the discovery of new molecules and pathways. The JGI … liquid chromatography mass spectrometry (LC-MS) based methods in combination with advanced computational analysis. …
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Finding the Fermenters
… and comprehensive database of fermentative prokaryotes. The Science Most organisms use oxygen to convert food into … multiple sources, including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm
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EcoFABs: advancing microbiome science through standardized fabricated ecosystems
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Comparative genomics of pyrophilous fungi reveals a link between fire events and developmental genes
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Comparative genomic analysis of thermophilic fungi reveals convergent evolutionary adaptations and gene losses
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