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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  … The JGI is not a funding organization. Rather, it makes its sequencing, synthesis, metabolomics and data analyses … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Annual Genomics of Energy & Environment Meeting
… Thank you for joining us at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics … invited talks emphasize how the research infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new …
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Massie S. Ballon
… Massie S. Ballon is the Communications and Outreach Manager at the JGI. Through multi-platform stories and outreach efforts, … Massie Ballon is the JGI's Communications and Outreach Manager. Click to see the … The Manager of Communications & Outreach is responsible for sustaining the …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… On July 8, JGI’s DNA Synthesis Science group held a  JGI … exist back then,” said Hal Alper, a University of Texas at Austin professor, “but we really first heard about the … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab … 871 Terabases of sequence We synthesized 9.7 Megabases of DNA We processed 13,700 metabolomics samples With our users, …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into carbon storage   The Science Boggy peatlands, which hold much of … was possibly driven by genetics, or even temperature. By sequencing the genome, researchers were able to pinpoint … The work (proposal no. 10.46936/10.25585/60001030) (A.J.S.) conducted by the US Department of Energy (DOE) Joint Genome …
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How to Target a Microbial Needle within a Community Haystack
… for capturing the genetic make-up of specific uncultivated microbes from complex environmental samples. The … for members of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast … sample and then sorting these cells so that their DNA could be sequenced. Their protocol,  detailed in the …
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DAP-seq Drives Robust Mapping of Gene Regulation
… yield an unprecedented view of plant evolution and adaptation.    Understanding how genes are regulated is like … complexity of plant genomes. Now, with improvements to DNA Affinity Purification Sequencing (DAP-seq), these barriers are falling. As  … (BER) missions. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
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Len Pennacchio
… joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging … biology. He holds joint appointments as a Deputy Director at the DOE Joint Genome Institute, Senior Scientist at … Len Pennacchio is the JGI's Deputy of Genomic Technologies. oClick to learn more …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new … “Now with these new tools — metatranscriptomics, RNA sequencing of soil RNA — we can access — ‘What are they … who nominated species for sequencing and then sent DNA and RNA samples to JGI,” Grigoriev said. All of these …
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Mapping Heat Resistance in Yeasts
… A new approach for improving functional annotation in fungal genomes. The Science In a proof-of-concept … aim to improve our understanding of fungal diversity by sequencing genomes from across the fungal Tree of Life, but … then used a series of random insertions of a foreign DNA sequence to generate a huge pool of mutants, each …
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