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Natural Prodcast Episode 21: Elizabeth Parkinson
… them are actinobacteria. And so we get a lot of them from databases of organisms, so things like the NRL database - or online catalog, I guess. So we've also been … that makes it really challenging to actually interpret the data. And so we've been able to get these-- DAN: In terms of …
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The Expanding Universe of Methane Metabolisms in Archaea
… the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. Department of Energy (DOE) … of Science User Facility, for publicly available metagenome data provided by the other study co-authors, and … alkane-oxidizing archaea. They used IMG because the database already contains metagenome datasets from a variety …
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Game On: High School Students Drive Everglades Metagenomics Study
… through over 55 billion genes and 16 trillion DNA bases of data, to figure out what to study and compare for the … to come up with a sense of what to focus on. With so much data and a lack of experience, this added a layer of … project. They had learned many statistical tests for raw data and how to use some bioinformatics tools for analysis …
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JGI announces 2025 Functional Genomics awardees
… program, these projects integrate cutting-edge genomic data with predictive modeling and bioengineering to advance …
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Busting the Unbreakable Lignin
… Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential genes … . The study’s pivotal NMR (nuclear magnetic resonance) data, gathered using magnetic fields to diagnose electronic …
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Streamlining Regulon Identification in Bacteria
… environments are expressed when their functions are needed. Data yielded through RIViT-seq expand the known … S. coelicolor . With results from the research, RIViT-seq data have increased the identification of the number of …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… team mined more than 8,500 publicly available metagenome datasets generated from sampling sites around the world, including data from several DOE-mission relevant proposals through … a multi-step approach to mine, bin and then filter the data for the major capsid protein (MCP) to identify NCLDV …
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Scaling Up Existing Skill Sets
… I got to work with an enormous set of fungal genomics data. For me, it was an opportunity to adapt my existing … a STEM career, particularly one that incorporates big data. A large part of my project this summer was utilizing a … and harness them to unlock statistical patterns in big data. …
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Natural Prodcast Episode 8: Eric Schmidt
… proteins interact with each other. There’s a lot of leading data from excellent groups about specific interaction …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… the study of giant viruses.  Kyrpides and the JGI’s IMG/M Data Portal were instrumental to  a study that looked into … also contributed to an update of  the JGI’s Genome OnLine Database (GOLD ) database that also marked the platform’s 25th anniversary, …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… find genetic regions of interest.” The combination of field data and genetic information has allowed the research team … cutting-edge genomics and genetic analysis with large scale data collection,” he added. Jeremy Schmutz , head of the  … is direct evidence of climatic adaptation. The team’s database of genes that underlie adaptation to climate …
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Natural Prodcast Episode 4: Nancy Keller
… Aspergillus was pretty good, but, you know, just from a data standpoint, just figuring out introns and dealing with, …
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