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Picking Up Threads of Cotton Genomics
All of these cotton lineages have genomes approximately 2.3 billion bases or Gigabases (Gb) in size, and are hybrids … lineages. Senior authors of the  paper published April 20, 2020 in  Nature Genetics include Jane Grimwood and Jeremy …
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Eelgrass Proves to Be Much Younger Than We Thought
Recent study shows eelgrass has been around about 2.5 million years less than previously believed.  The … its history. Their research, published in  August 2023 in  Nature Plants , was able to assess absolute time …
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JGI@25: Solving the Mystery of the Missing Oil
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that …
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Expanding Virophage Diversity
… virophage marker gene MCP, they were able to identify 44,221 total virophage partial sequences, including over 28,000 unique MCP sequences.  Further analysis led to the …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… in Complex Systems (LRC) in Menlo Park, Calif. In the June 24, 2022, issue of the journal Science, Volland and colleagues, …
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Uncovering Novel Genomes from Earth’s Microbiomes
… in a wide range of research fields. A public repository of 52,515 microbial draft genomes generated from environmental … archaea by 44%, is now available and  described November 9, 2020 in  Nature Biotechnology . Known as the GEM (Genomes from …
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A Collaboration to Improve Plant Genome Annotations Across Species
… plants did you all look at? Avinash: We started off with 12 plants, which are JGI Flagship Plants, mostly related to … we are looking at 18 different species, which included over 2000 RNA Seq libraries. As I previously mentioned, this is … to standardize the experimental protocols. Then, in 2020, seven more groups joined the project to contribute to …
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Calculating the Costs of Multiple Switchgrass Gene Copies
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Ray Turner Completes Last Tour of Lab Duty at JGI
… one constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s vigilant stewardship as JGI’s … one constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s vigilant stewardship as JGI’s …
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Evolution of a Fungal Gene Expression Regulator
… of life, they tracked the evolution of 5mC pathways across 528 species. The researchers found that unlike most flowering … of the US Department of Energy under contract no. DE-AC02-05CH11231. The Georgia Advanced Computing Resource Center (GACRC) …
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Tracking the Origins of Methane-Producing Microbes
… three pathways for methanogenesis: hydrogen-dependent and CO2-reducing, or hydrogenotrophic (most common); … complete set of genes needed for hydrogen-dependent and CO2-reducing methanogenesis.  These two things combined led us …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… out and characterize uncultivated viruses. For instance, a 2018 study from a JGI-led team uncovered giant viruses in … as a barcode to sift out virus fragments, reconstructing 2,074 genomes of large and giant viruses. More than 50,000 … As a result, the giant virus protein space grew from 123,000 to over 900,000 proteins, and virus diversity in this …
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