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… approach to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of … of essential genes in metabolic networks that were missed using traditional approaches. This novel form of … the realm of bioenergy optimization. Summary Life is all about balance. This study,  recently published in the  …

… analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple … she said. Listen to study co-author Dan Udwary talk about genome mining using the GEM catalog in  this episode … draft genomes are imperfect, they can still reveal a lot about the biology and diversity of uncultured microbes.” …

… called galls.  In this episode, hear from Kasey and Patrick about how this project unfolded, and how they worked with the JGI's metabolomics program to find out more about these weird little pods. …

… carbon and cycle key nutrients like nitrogen and phosphorus.  This way, the fungi of forest soils hold keys to tree … give researchers a way to access much more information about fungi in these environments. “Now with these new tools … soil samples of these varied biomes; the forests share only about 20% of their fungal species. To make useful …

… expands the global diversity of large and giant viruses. While the microbes in a single drop of water could … they are found everywhere, comparatively little is known about viruses, much less those considered large and giant. … the globe, then using these sequences to make inferences about the biogeographic distribution of these viruses in the …

… the world’s rivers and their microbial communities. He’s focusing on the Arkansas River and how microbes might be influencing its health.  He sat down with me to talk about his project, and riffed a bit on what it means in a … where we’re moving from when my father was born, of about 2 billion people on the planet, to you know, within my …

… of fermentative prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in … or no oxygen, life had found other ways to produce energy, using a process called fermentation. To better understand … used the JGI’s GOLD and IMG data portals to get information about the genomes and genes of the organisms on the list. …

… they need to survive. To fill in their nutrient gaps, they must latch onto a larger host — often, a fellow archaeal … new views of these relationships.  Recently , researchers used population genomics to find that while archaeal … cycling across the planet. Summary To understand more about how archaeal hosts and hitchhikers coexist, …

… identify mobile genetic elements like plasmids and viruses. The Science Mobile genetic elements (MGEs) are genetic … cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in virtually all of … biogeochemical cycles around them. By understanding more about the genomics of MGEs and their evolution at the …

… crop yields.  The Science The fire moss Ceratodon purpureus is a short plant with a complex genome . Now, … pathways could lead to the discovery of genes that could be used for multiple biotechnological applications. These … HudsonAlpha. As the team discussed in a JGI podcast episode about the work, the effort to fully sequence the fire moss …