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Bacteria and Fungi Divvy Up the Work in Forest Floor
… when it comes to breaking down tough plant fibers. The Science Walk in a temperate forest filled with Norway spruce … UniProt, exist, are not specific enough for a microbial community like that from a temperate coniferous forest floor … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Trent Northen
… has had leadership roles within large DOE-funded research programs using mass spectrometry for energy and … the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic … ecosystems (EcoFABs). … Trent Northen is the Metabolomics Science Program Head at the JGI. Click to learn more about …
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A toolkit for microbial community editing
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Genomes that Paved the Way This project stems from a Community Science Program proposal that Martin submitted in … said, the 1000 Fungal Genomes project, together with other CSP projects, had sequenced over 2,000 fungal genomes. The …
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Effects of Polar Light Cycle on Microbial Food Web
… lake microbial communities change with the seasons. The Science Light-harvesting bacteria (phototrophs) in … Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published … (Berkeley Lab). The work was enabled by the JGI’s Community Science Program. For most months each year, Ace …
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Qualitative and quantitative resistances to leaf rust finely mapped within two nucleotide‐binding site leucine‐rich repeat (NBS‐LRR)‐rich genomic regions of chromosome 19 in poplar
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Sediment microbial communities in Great Boiling Spring are controlled by temperature and distinct from water communities
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Co-occurrence networks reveal more complexity than community composition in resistance and resilience of microbial communities
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A Collaboration to Improve Plant Genome Annotations Across Species
… improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently … keep updating the Gene Atlas with curated datasets from CSP projects and aim to improve plant gene function … a subscriber? Avinash: It has been publicly available since 2018. There were more than 15 citations even before this was …
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iPHoP: A Matchmaker for Phages and their Hosts
… computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do … prediction approaches, researchers have created a new program called iPHoP (pronounced “eye-pop”,  freely … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National …
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Marine Microbe Contains Multitudes
… ecologically distinct groups with different lifestyles. The Science The bacterium SAR324 is unusually cosmopolitan. In … cells and their gene expression, the team then sequenced community genomes and expressed gene transcripts … at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Gut Fungi: Unexpected Source of Novel Chemicals
… expensive feat thought to be too costly for them. The Science Anaerobic fungi, which die in the presence of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … a National Science Foundation Graduate Research Fellowship Program under Grant No. 1650114, a UCSB Graduate Division …
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