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… and a unique chronic infection cycle. “We’re not sure why we systematically manage to miss them; maybe it’s due to … first worked on a reference dataset that included genome sequences known to be affiliated with the Inoviridae. “What … inoviruses are in every major microbial habitat—including soil, water, and humans—around the world. By the numbers, …

… preview of how large-scale single cell genomics complements metagenomics studies. The Science Researchers demonstrated … snippets of microbial genomes directly from environmental sequence data, by piecing each genome together from large mixtures of genomic sequences. A complementary approach to this is single cell …

… June 24-28: Module 2/Microbial Genomics & Metagenomics Workshop The workshop is addressed to students … sharing concepts, tools and research results in genomics, metagenomics and the human microbiome. The workshop will …

… Program aims to generate large datasets to explore sequence-function relationships, advancing the discovery of … Science Group supports researchers exploring how to convert sequence into functional assessments. The team has a … of fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to conduct comparative and …

… to as natural products, the proposal includes plans to sequence several thousand Actinobacteria strains and then … through photosynthesis, but only a fraction have been sequenced.  Adriana Lopes dos Santos from Singapore’s … Nanyang Technological University aims to generate genome sequences from underrepresented green algae groups in a wide …

… is particularly interested in understanding how, when and why microbes decide to produce which metabolites. … Characterization of p-hydroxycinnamate catabolism in a soil Actinobacterium. J. Bacteriol. 196, 4293-4303. Otani, …

… these researchers will harness capabilities including metagenomics, metatranscriptomics and genome assembly to … plant metabolism across diverse ecosystems — from Antarctic soils and Icelandic hydrothermal systems to coastal wetlands … plant–microbe interactions that enhance crop resilience and soil health. Proposals are accepted year-round for this …

… His group also handles the Stable Isotope Probing (SIP) Metagenomics pipeline  that reveals in situ functional … quantitative analysis strategy for stable isotope probing metagenomics. mSystems 8:e01280-22. Volland et al. 2022.   A … Couradeau, J.S. et al. 2019. Probing the active fraction of soil microbiomes using BONCAT-FACS.  Nature Comm 10(1) 1-10 …

… Group. Many of these bacterial and archaeal genome sequences have been generated using techniques that the JGI has pioneered, including single-cell genomics and metagenomics. The GEBA initiative has also utilized a very … approaches applied to relatively tractable samples like lakes and rivers could help fill in the gaps,” she added. …

… litter and to incorporate the assimilated carbon into the soil, reducing the amount of CO2 emissions from decaying … M. importuna CCBAS932 from the forests of France, were sequenced and annotated by a collaborative team. The genome sequences and annotations are available on JGI’s fungal …