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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… researchers worldwide.  Q:  To what extent is natural soil a limit to identify molecules exchanged between plants … analysis directly from the rhizosphere in natural soil? A:  It depends on the soil. Typically soils that have … transcriptome analysis and 8 replicates for metabolomics. Why is this? A:  We did a pilot experiment with the JGI to …
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Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains
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Fungal Friends or Foes in Plant Roots
… from natural Arabidopsis populations around Europe. The JGI sequenced and annotated 41 fungal isolates from the … Programme: Deconstruction and Reconstruction of the Plant Microbiota (SPP DECRyPT 2125)’ and the Cluster of Excellence …
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Learning to Look
… and a unique chronic infection cycle. “We’re not sure why we systematically manage to miss them; maybe it’s due to … first worked on a reference dataset that included genome sequences known to be affiliated with the Inoviridae. “What … inoviruses are in every major microbial habitat—including soil, water, and humans—around the world. By the numbers, …
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What Happens Underground Influences Global Nutrient Cycles
… (BER), Brodie and his colleagues have been running a soil-warming experiment in the Sierra Nevada mountain range … responses and feedbacks to warming through the whole soil profile. The goals of their FICUS proposal include … of genome-derived functional traits through the soil profile and their relationships with soil properties …
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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups
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Meta-omics survey of [NiFe]-hydrogenase genes fails to capture drastic variations in H2-oxidation activity measured in three soils exposed to H2
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Frederik Schulz
… and eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs multi-omics (metagenomics, … mSystems. 5 (3) Schulz et al. (2018) Hidden diversity of soil giant viruses. Nature Communications. 9 (1), 1-9 Roux … 1-6 Google Scholar … Senior Editor, ISME Journal LBNL LDRD (Soil Protists) FY2022 LBNL LDRD (Viral Variant Surveillance) …
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JGI-USCCN Strain Sequencing Opportunity
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Characterizing Communities: JGI Announces Latest CSP Portfolio
Proposals aim to sequence and annotate genomes from Antarctica to Africa to … of France’s Institut de Biologie. His team proposed to sequence  Chaetoceros microalgae, or diatoms. Through the … Their presence reduces the need to add fertilizers to the soil. diCenzo’s proposal is also notable as he had an …
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Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation
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