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Year in Review: JGI’s 2018 Progress Report Available Now
… Park, taken by JGI’s own Jon Bertsch. Microbes isolated from Mono Lake were sequenced by the JGI (isolates here , here and here ), and the data has been used …
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Metabolomics
… JGI Metabolomics Platform delivers rich metabolite profiles from diverse biological and environmental samples using … molecular profiles are generated for metabolites extracted from a variety of experimental samples, including organisms … more about our submission guidelines, what you can expect from your results as well as our library standards. …
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Development of a Recombineering System for the Acetogen Eubacterium limosum with Cas9 Counterselection for Markerless Genome Engineering
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Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii
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A novel regulator of the fungal phosphate starvation response revealed by transcriptional profiling and DNA affinity purification sequencing.
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Ecological Dichotomies Arise in Microbial Communities Due to Mixing of Deep Hydrothermal Waters and Atmospheric Gas in a Circumneutral Hot Spring
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The trajectory of microbial single-cell sequencing
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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) … of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural … Deep learning algorithms can vectorize faces… … so, why not proteins?         …
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Deeplasmid: deep learning accurately separates plasmids from bacterial chromosomes
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scMicrobe PTA: near complete genomes from single bacterial cells
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Metagenome Stability Diagram — a tool within the Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has … tool to correlate protein annotations with ratios of DNA sequence fragments from the ecosystems. Selecting a protein identified from …
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Soil virus offers insight into maintaining microorganisms
… AMGs in soil viruses thought to break down chitin, the gene sequences were cloned by the JGI.  The JGI’s DNA synthesis … in archaea, fungi or bacteria. Certain similarities with bacterial counterparts suggest the viral versions of the … and AMGs. It could spawn future research into understanding why these AMGs exist in the first place, and what function …
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