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Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, Keedrian Olmstead was back on campus at the … challenges UC Merced graduate students with individual projects at the DOE JGI that provide hands-on experience in … that would allow users to simultaneously run several programs for RNA-Seq assembly to determine which is best for …

… the JGI Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research … out to characterize the transcriptome – the complete set of RNA molecules transcribed from all the genes within a cell … of Energy (DOE) Joint Genome Institute (JGI)*, a national user facility located at Lawrence Berkeley National …

Matt is broadly interested in the interactions between microbial life and environment, and using metagenomics to … interest. Matt also supports various CSP and FICUS user projects for the Metagenome Program. …

… hours.   FY 2024 DOE Metrics There were 2,456 unique* JGI users in FY2024 , which includes Principal Investigators … counted once, even though an individual may have several projects/roles. Sequencing Quarter Total Bases (Trillions) … Q1 – Report on new computational developments for improving microbial, metagenomic, or plant genome assemblies. …

Woyke as a pioneer in uncovering the hidden diversity of “microbial dark matter”–that uncultured and unknown majority … Lab), Woyke currently serves as the interim deputy for JGI User Programs. Earlier this year, she was elected to the American …

… which combines an in vitro transcription assay with RNA sequencing, they were able to identify the target genes … coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions is part of the … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …

Biology Program .  Representative software includes: gRNA-SeqRET , an organism-agnostic CRISPR gRNA design tool BOOST , which provides a suite of tools to …

… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … characteristics. When they tested the screen method on a microbial community from geothermal hot springs, they … activity assay. The work was  reported in  The ISME Journal . While the screen caught several microbes from known …

… poplar an economical and sustainable source of energy and materials. …