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How to Target a Microbial Needle within a Community Haystack
… of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of microbes that play key roles in global biogeochemical cycles remains unexplored and uncultivated. Developing a … allow researchers to focus on specific microbes within metagenome samples and associate their sequences with their …
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An Automated Tool for Assessing Virus Data Quality
… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … microbes that play key roles in cycling nutrients such as carbon, nitrogen and sulfur are themselves regulated by … based on open ocean samples. CheckV identified a total of 44,652 complete or near-complete viral genomes across both …
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JGI at the AGU Fall Meeting
Tips for Submitting Successful Proposals December 9  4:15pm PT (online) Town Hall on how the Facilities … in Sacramento-San Joaquin Delta, California” December 14 8:05am Convention Center, Rm 231-232: Josue … “Effect of drought on soil microbial metabolisms driving carbon allocation and volatile organic compound cycling in …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… of 13 JGI scientists since the program’s inception. In 2014, JGI’s Zhong Wang and Science Programs Deputy Axel Visel … and hard work have carried it through the difficult early stages, so I can begin biological analysis of the data sooner … and Blood Institute in August 2018 Travis Lawrence (2014 graduate intern): Accepted a post-doctoral position with …
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JGI@25: The Little Alga That Could
… also contains hundreds of genes uniquely associated with carbon dioxide capture and the generation of biomass, making …
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Forming Scientific Connections and Building Community
… system for the selection of genes essential for specialized carbon utilization ” Jesica Calderon : “Being a JGI intern …
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Digging into Microbial Ecosystems Deep Underground
… so much of what we see on earth in terms of nutrient cycles and biogeochemical cycles…. Viruses play a pretty important role in the cycling …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
Genome Initiative. Brassicales is represented by more than 4,700 species, and the proposal focuses on investigating the … also approved to learn more about the roles of diatoms in carbon fixation and in aquatic food webs. Finally,  …
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JGI Announces 2025 New Investigator Portfolio
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Frederik Schulz
… sequence data. Dr. Schulz employs multi-omics (metagenomics, metatranscriptomics, single cell genomics and … that may impact microbiome structure and biogeochemical cycles. He provides his expertise to the JGI user community … University of Vienna (Austria) … Krinos et al. 2024. Time-series metagenomics reveals changing protistan …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… (Setaria viridis), a small model grass with a short lifecycle that uses a carbon fixation process known as the C4 pathway, which particularly helps plants thrive in warm, …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… play a crucial role in how an organism processes both carbon and nitrogen. This research team combined … located at Berkeley Lab. In addition to providing metagenome mining for computational analysis of the AT enzyme …
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