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Game On: High School Students Drive Everglades Metagenomics Study
In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in … out to many researchers with the hope of getting support for a research project for his class of 18 juniors.  He got … These high school students now feel more empowered and equipped for their future research endeavors.” The students were …
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Understanding Wildfire Recovery, Starting in Soil
The Science After a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, … viruses and fungi process carbon and nitrogen, paving the way for future plants and trees to grow. However, fire … and growth.  This study builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … and EMSL. New Methane-Makers Have Alternate Metabolic Pathways And there is something special about these new lineages …
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Epicuticular wax accumulation and regulation of wax pathway gene expression during bioenergy Sorghum stem development
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Single Cell Research Group
… material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from … genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic … based on annotation may not be sufficient. A more recent effort in the Woyke lab is therefore focused on the …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… metabolites and associated genes are great resources for bioremediation, new agricultural applications or … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … teaching plant biology. It is typical of most ferns in many ways, including its large genome with numerous chromosomes. …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
Journal publication caps JGI pilot project with fledgling Florida high school … provides the only known reference microbiome data sets for the Loxahatchee Refuge,  was published in the journal  … in these classes are allowed to do. I hope they can walk away from this project empowered to go into college and seek …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … gaps of knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria ( …
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Expanding Virophage Diversity
… the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science facility, have increased the … & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the virophage marker gene MCP, they were able to identify 44,221 total virophage partial sequences, including over 28,000 …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… from the ACTIVE SITES Research Center (ACSI), the Centre for Water and Environmental Research (ZWU) of the University … One Health Ruhr (OHR), and the DOE Joint Genome Institute (JGI), Molecular Biophysics and Integrated Bioimaging (MBIB) … (MoU) signed between UDE and Berkeley Lab in 2022, the delegation from UDE familiarized themselves with the …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… organisms called phytoplankton (from the Greek phyto for ‘plant’ and planktos for ‘wanderer’). But they vary … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Sailing from pole to pole on four research cruises, they dipped their self-closing containers into sea water to sample …
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Complete Genome of Serratia sp. Strain FGI 94, a Strain Associated with Leaf-Cutter Ant Fungus Gardens
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