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Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups
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Genome-Wide Association Studies across Environmental and Genetic Contexts Reveal Complex Genetic Architecture of Symbiotic Extended Phenotypes
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DNA Synthesis Program
… The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, advancing the development of biofuels, biochemicals and other bioenergy solutions.  … project. These advancements contribute to the development of new biofuels and sustainable biochemicals. The DNA …
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Natural Prodcast Episode 9: Roger Linington
… DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger … University in British Columbia, Canada. This is the last of the podcasts we recorded in my hotel room at SIMB, or the … environmental roles of these compounds? Can we perform studies such as looking at the distributions of different …
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Building Sphagnum Genomic Resources
… Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system focused on carbon cycling studies, rather than for food or fuel applications. The … estimate that they hold about 25 percent of the world’s soil carbon. In high latitudes, sphagnum can also act as a …
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Industry Engagement Program
… joined the JGI in 2017, he brought with him 20 years of industry experience — and an opportunity to expand the JGI’s portfolio of user companies. Now the Department of Energy is uniting National Labs and industry, including … funded by an industry partner to perform a defined scope of work using the JGI’s unique facilities, equipment, and …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the … method could also improve genome recovery in microbiome studies, these scientists (now at Stanford University) … together, they found most bacterial genomes from water and soil communities were at least 80% complete when studied …
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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … ‘Dark Matter’ Microbial communities living everywhere from soils and stomachs to the deep sea are capable of doing a … families preferred a specific environment — whether that be soil, animal hosts, marine ecosystems, etc.  “So, they must …
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High-quality permanent draft genome sequence of Ensifer medicae strain WSM244, a microsymbiont isolated from Medicago polymorpha growing in alkaline soil
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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Genome‐Wide Association Study Identifies Candidate Loci Underlying Agronomic Traits in a Middle American Diversity Panel of Common Bean
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A 34K SNP genotyping array for Populus trichocarpa: Design, application to the study of natural populations and transferability to other Populus species
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