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The Expanding Universe of Methane Metabolisms in Archaea
… into an ancient metabolism. Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea … geochemical data, which in turn can help to understand its impact on climate along earth history.” Marker genes for …
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on or off by the … genes of 11 sigma factors in Streptomyces coelicolor . The Impact As an integrative genome science user facility, …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden understanding of … terpenes play key roles in plant growth, defense, and environmental interactions. Terpenes are also economically … genera Angophora , Corymbia and Eucalyptus . The Impact The genus Corymbia is endemic to northern Australia …
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Prepublication data sharing
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Workforce Development & Education Outreach
… through working directly with specific universities, continuing education programs in the Bay Area, and established programs … our aim is to inspire students and established professionals to explore opportunities in STEM by providing hands-on … The JGI and UC Merced have had a long-standing internship partnership that started in the …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… To boost crops more efficiently in the future, the evolutionary past may hold key insights. The way that plants process nutrients has a rich back story — they rely on enzymes that have been evolving for billions of years. However, these enzymes are often loosely …
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Rex Malmstrom
… is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth rates and carbon consumption of SAR11 bacteria, the most abundant … genetic material, thus bypassing the need to culture these microbes in the lab. After joining the JGI, he formed the …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … small fraction of Earth’s microbial diversity. Because most microbes cannot be cultivated under laboratory conditions, … modeling], but they might be interested in how biochemistry impacts what they work on. The genomics community can now …
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Hiroshi Otani
… Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, particularly actinomycetes. His research activity is focused on developing and implementing new technologies and … H, Mouncey NJ. RIViT-seq enables systematic identification of regulons of transcriptional machineries. Nat Commun. …
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DOE JGI Interns Share Their Summer Experiences
… the field, work at the lab bench, and also do some computational analyses at their desks. As part of the DOE JGI’s efforts to promote diversity and inclusion in the sciences, among the interns were two undergraduate students and two …
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Meanders as a scaling motif for understanding of floodplain soil microbiome and biogeochemical potential at the watershed scale
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Frequently Asked Questions: Proposal Submission
… See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific details including project …
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