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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative … on, there are 7 genomes on NCBI but your portal has only 2 of them. A: Watch the video (above) for the answer provided … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version 13 will become … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics as part of our  2022 Annual Meeting . The … featured keynote speeches from Nobel Laureate Jennifer Doudna of the University of California, Berkeley and Berkeley … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and present-day … genomics studies, offering insight into genes critical for roles including plant growth and cell wall development.  M. … ) conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 …
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An Integrated Dataset to Understand Ecosystem Interaction
… yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar trees and their … data set will help identify how different elements of the ecosystem interact and respond to changes in the … metagenomics, scientists were able to analyze the DNA of microbes living around the tree roots in the …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help … host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … fungi and bacteria can thrive in plant roots. They play key roles in maintaining the plant’s health and diversity, which …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … ramorum genome. The JGI generated the organism’s DNA code in tandem with a closely-related plant pathogen … sequences uncover evolutionary origins and mechanisms of pathogenesis . Science. 2006 Sep 1;313(5791):1261-6. doi: …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… school scientists. The Florida Everglades evokes images of fanboats skimming over swamps, while alligators peer … Beach County, and particularly about the microbes that play roles in the methane cycle. Their data report, which … JGI researchers walked students through the processes of DNA sequencing, metagenome assembly, and even an …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … catalyzed by microbial communities. By pairing RNA or DNA sequencing with tracings of stable, heavy isotopes, SIP … of Lawrence Livermore National Lab also played key roles in creating sessions where attendees could focus on …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. … of data sequenced — that’s three-quadrillion base pairs of DNA sequence! To meet this “ data tsunami ,” as Kathy Yelick … climate. They may also provide a basic understanding of the roles microbiomes play in determining the behavior of the …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… On July 8, JGI’s DNA Synthesis Science group held a  JGI Engagement: Accessing Functional Genomics Capabilities Webinar inviting … really fully exist back then,” said Hal Alper, a University of Texas at Austin professor, “but we really first heard … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Nandita Nath
… Nandita is involved in developing new methods to improve genome recovery from single cells and to build sequencing libraries from minimal DNA input without amplification. …
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