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The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… On July 30, UC Merced students and their JGI mentors toasted to the end of a nine-week virtual internship. The celebration was … despite the challenges of remote work. In addition to the knowledge gained on the job, interns had the opportunity to …
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The JGI Data Portal: Improving User Experience
… The human-centered, agile collaboration between the JGI and the … resource — it provides access to all of JGI’s genomic databases and tools,” noted  Kjiersten Fagnan , JGI’s Chief … out and share your thoughts — they’ll help us build a solid knowledge base that may inform future updates to one (or …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into … gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. Department of Energy (DOE) …
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Supporting Global Research into Actinomycetes
… ActinoBase offers a public portal of insight into special groups of … cornerstone of ActinoBase,  a public platform built on the knowledge of researchers studying actinomycetes and the … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Learning to Look
… Machine learning approach significantly expands inovirus … “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to identify a …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… New 5-year strategic plan outlines how the JGI will advance the … for the global research community. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released … and the global research community will bridge fundamental knowledge gaps to advance biotechnology and …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users … Through its partnership with NERSC and the DOE Energy Sciences Network … to facilitate these efforts. Particular areas of emphasis will be the development of tools and …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining lab protocols at the bench to … aspect of her project, Hour mentioned that she had gained knowledge in bioinformatics and machine learning. “Also,” …
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Triggering Morel Fruiting
… A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis … roots as well. This might be one of the key physiological factors that trigger forest mushrooms with diverse trophic … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are … surveyed publicly available data in the JGI’s  IMG/M database , information the Probst lab used to search for and …
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