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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … the JGI has pioneered, including single-cell genomics and metagenomics. The GEBA initiative has also utilized a very … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have … a Genome Insider podcast minisode.) Since the JGI’s early sequencing of C. reinhardtii became available, data mined by … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… On September 1, JGI held a JGI Engagement: Pro Tips for … data analysis. It is a free, open source analytics platform provided to the research community by DOE. … can show reviewers the team is really able to take advantage of the data and work with the data. Q: How would you …
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Tapping the treasure trove of atypical phages
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Genome Sequence of the Mesophilic Thermotogales Bacterium Mesotoga prima MesG1.Ag.4.2 Reveals the Largest Thermotogales Genome To Date
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Anuvia taps JGI for expertise to pinpoint products from beneficial soil microbes
… bioenergy security for a steadily growing worldwide population. Anuvia Plant Nutrients , a small Florida business producing bio-based plant nutrition products that target soil enrichment, is partnering with … help drive discoveries that will render new economic advantages for farmers concerned with improving sustainable soil …
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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons on presentations to peatlands Travis Lawrence sits in … would best serve their quests related to processing RNA-sequencing information. According to Lawrence, this summer … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately … the genome as if it were a language, then we can take advantage of existing methodologies developed for natural … to train GenomeOcean are publicly available on JGI data platforms, generated from past studies conducted by JGI …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… Accepted proposals emphasize JGI interests in algae and secondary metabolites. A total of 27 proposals have been  … Knowledgebase (KBase) , a free, open source data science platform that allows users to explore data and share … Wisconsin Institute for Discovery (WID) are interested in sequencing secondary metabolite-producing environmental …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or harm … Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other … of the key community participants and enabling future metagenomics studies.   …
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Genome Sequence of Polycyclovorans algicola Strain TG408, an Obligate Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton
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JGI@25: Studying Sorghum’s Survival Skills
… In honor of the JGI's 25th anniversary in 2022, we have … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have … JGI: 2009: JGI and collaborators use whole-genome shotgun sequencing to analyze the 730-megabase Sorghum bicolor (L.) …
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