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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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Maureen Berg
… Maureen is currently developing new high-resolution and high-throughput methods to link uncultivated viruses to their host. With these new methods, she hopes to expand our understanding of the …
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JGI@25: The Little Alga That Could
… challenges. Chlamydomonas is a single-celled alga with a unique place in evolutionary history. Retaining … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … on green algae. “The Chlamy genome launched over a dozen of new Chlamydomonas genome-related Community Science Program …
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Year in Review: JGI’s 2018 Progress Report Available Now
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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to the  International Cocoa … metric tons . The global chocolate brands couldn’t exist without cocoa.  But today the plant is under threat due to … of the world’s largest buyers of cocoa, is collaborating with others to develop healthier and more productive cacao …
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JGI@25: Solving the Mystery of the Missing Oil
… that will help solve energy and environmental challenges. Within days of the Deepwater Horizon oil rig explosion that … a former Berkeley Lab environmental biologist and current holder of the University of Tennessee-Oak Ridge National … cell genomics expertise led to the identification of a new “oil-seeking” species related to Oceanospirillales , …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… Find recordings and recaps of these talks below, starting with Ari Patrinos. The Genomics Arms Race Ari Patrinos , … Kuhn in his 25th Anniversary presentation. “Those driven by new tools and those driven by new concepts.” Patrinos went … out there, Drell noted, including the figure 30-million fold: How much JGI’s productivity has increased since 1997. …
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Webinar: SIP technologies at EMSL and JGI
… EMSL such as DNA-SIP, Protein SIP, Flux Balance analysis with metabolites, Isotope Ratio Mass Spectrometry, NanoSIMS, … so you’d need at least 2 micrograms in the sample to start with. 2. Q: What would a typical turnaround time be for data … the isotopomers. We estimate the overall atom enrichment within the bulk community DNA, and that gives us a rough …
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A chromosome‐scale reference genome of trifoliate orange (Poncirus trifoliata) provides insights into disease resistance, cold tolerance and genome evolution in Citrus
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Genomic profiles of four novel cyanobacteria MAGs from Lake Vanda, Antarctica: insights into photosynthesis, cold tolerance, and the circadian clock
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Fungus Fuels Tree Growth
… root cells. The fungus is almost always found among and within poplar trees, and in an effort to understand its … how poplar responds to its intimate associations with endophytes — a group whose effects on plants are still … poplar growth, the team compared poplar cuttings grown with and without an inoculation of the  M. elongata strain …
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic … number of known high quality virophage genome sequences 10-fold through computational approaches. By mining more than … of 328 “high quality” (based on completeness) diverse new virophage genomes containing all four core genes. These …
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