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Improving Synthetic Biology Communication: Recommended Practices for Visual Depiction and Digital Submission of Genetic Designs
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The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization
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Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure
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Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for Computational Genomics, and led the computational … human chromosomes. After successful completion of the Human Genome Project, Professor Dr. Rokhsar ’s team has continued … AB in Physics, Princeton University, NJ MS in Theoretical …
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Building Sphagnum Genomic Resources
… Sphagnome data would enable researchers’ insights on their … model system focused on carbon cycling studies, rather than for food or fuel applications. The Impact Sphagnum’s impact … researchers are aiming to have two high quality reference genomes for peat-forming species that occupy different …
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Dynamic nitrogen fixation in an aerobic endophyte of Populus
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … Understanding the genetic underpinnings responsible for these traits takes us closer to harnessing algae for …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth Day … relevant to living on a changing planet. Transcript for Audio   ALISON:  Hey! I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two special days occur in April: … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Forming Scientific Connections and Building Community
… pick highlights from their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome … experiences and what they’ll take with them as they go forward in their careers.   Listed below are the interns, … Calderon : “Being a JGI intern means being a part of a dynamic and innovative environment where collaboration and …
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A Complex Confection Decoded: Sugarcane Reference Genome
… Sugarcane was the last major crop without a reference quality genome and now crop researchers can work toward advancing … world’s most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for … The work (proposal: https://doi.org/10.46936/10.25585/60001084 and …
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UC Merced Interns Reflect on Their JGI Summer Projects
… Over the course of eight weeks this past summer, 10 students from UC Merced worked closely with … worked on ranged far and wide — from implementing new data visualization tools, to using natural language processing techniques to categorize genetic information. Learn more about their work here in a series of …
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Analysis of the Phlebiopsis gigantea Genome, Transcriptome and Secretome Provides Insight into Its Pioneer Colonization Strategies of Wood
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