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Diversity and population structure of northern switchgrass as revealed through exome capture sequencing
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Rapid Quantification of Mutant Fitness in Diverse Bacteria by Sequencing Randomly Bar-Coded Transposons
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acCRISPR: an activity-correction method for improving the accuracy of CRISPR screens
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How Filamentous Fungi Sense Food
… . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … and optimized by Ronan O’Malley, who leads the JGI’s Sequencing Technologies group. DAP-seq allowed the team to …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … scan for those snowflakes, or RNA virus sequences. Using this workflow, the team combed through more than 5,000 … the world, resulting in a five-fold increase of RNA virus diversity. “The world of viruses around us is vast, and we …
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You Can Move, But You Can’t Hide
… to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. … and metatranscriptomes. To lower barriers to accessing and using geNomad, the JGI partnered with the NMDC to integrate … to become an essential tool for researching global viral diversity. geNomad has already been downloaded thousands of …
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the … at Lentinula samples from around the world. By complete sequencing of 24 new mushroom genomes, and assembling …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
As part of the JGI’s 25th anniversary celebration, the 2022 Annual … from its beginnings in the sequencing for the Human Genome Project out to the future of the institution. Their … Thomas Kuhn in his 25th Anniversary presentation. “Those driven by new tools and those driven by new concepts.” …
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Laying the Foundation for a Genomic Rosetta Stone: Creating Information Hubs through the Use of Consensus Identifiers
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High Density Genetic Maps of Seashore Paspalum Using Genotyping-By-Sequencing and Their Relationship to The Sorghum Bicolor Genome
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MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm
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The Genome of Akkermansia muciniphila, a Dedicated Intestinal Mucin Degrader, and Its Use in Exploring Intestinal Metagenomes
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