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Metagenomics uncovers gaps in amplicon-based detection of microbial diversity
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Tackling soil diversity with the assembly of large, complex metagenomes
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… these solutions to the worldwide scientific community through its  User Programs on a competitive, peer-reviewed … scope of the virosphere Keynote Talk Title : “Redefining Virus Macroevolution” Edward Holmes is an evolutionary … and his group want to better understand how wide this biodiversity is, and what factors determine how a particular …
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Virus-Microbe Interactions of Mud Island Mangroves
… dissertation. Some of his research was conducted at the JGI through the DOE Office of Science Graduate Student Research … I wanted to incorporate that CSP, but also look at how viruses might be influencing the methane cycling within … wetlands.” A chapter of Rambo’s research focuses on how viruses influence carbon cycling in coastal mangroves. His …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… efforts to build predictive models for the behaviors and interactions of complex systems.  One of its key innovations … foundation models. However, the sheer vastness of microbial diversity is not covered by reference genomes.”  Most of the … AI models. I hope that the JGI will eventually not only host data, but also host these models — while helping its …
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Diversity and function of methyl-coenzyme M reductase-encoding archaea in Yellowstone hot springs revealed by metagenomics and mesocosm experiments
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Cataloging the Microbes that Manage the Health of River Systems
… of these systems, these communities remain understudied. Through the JGI’s Community Science Program, Colorado State … they utilized over 160 river water samples collected through WHONDRS, a community science river sampling program … The published river microbiome datasets are also available through the DOE Systems Biology Knowledgebase, allowing …
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Metabolic reprogramming by viruses in the sunlit and dark ocean
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Four principles to establish a universal virus taxonomy
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Acquisition and Adaptation of Ultra-small Parasitic Reduced Genome Bacteria to Mammalian Hosts
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Discordant population structure among rhizobium divided genomes and their legume hosts
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New insights from uncultivated genomes of the global human gut microbiome
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